Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57810 211 / 1e-69 Cysteine proteinases superfamily protein (.1.2.3) AT2G38025 67 / 5e-14 Cysteine proteinases superfamily protein (.1) AT2G27350 46 / 4e-06 OTLD1 otubain-like deubiquitinase 1, OTU-like cysteine protease family protein (.1.2.3.4.5.6) AT1G50670 43 / 2e-05 OTU-like cysteine protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015803 [exp] 292 / 2e-103 AT3G57810 215 / 3e-71 Cysteine proteinases superfamily protein (.1.2.3) Lus10020438 [exp] 223 / 2e-73 AT3G57810 290 / 3e-97 Cysteine proteinases superfamily protein (.1.2.3) Lus10008986 [exp] 177 / 1e-55 AT3G57810 187 / 9e-58 Cysteine proteinases superfamily protein (.1.2.3) Lus10028840 [exp] 178 / 7e-55 AT3G57810 194 / 4e-59 Cysteine proteinases superfamily protein (.1.2.3) Lus10027758 [exp] 53 / 7e-09 AT2G38025 227 / 4e-75 Cysteine proteinases superfamily protein (.1) Lus10005193 [exp] 48 / 9e-07 AT2G27350 549 / 0.0 otubain-like deubiquitinase 1, OTU-like cysteine protease family protein (.1.2.3.4.5.6) Lus10006255 [exp] 42 / 9e-05 AT5G67170 363 / 7e-124 SEC-C motif-containing protein / OTU-like cysteine protease family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G177400 [exp] 241 / 7e-83 AT3G57810 223 / 6e-74 Cysteine proteinases superfamily protein (.1.2.3) Potri.016G050900 [exp] 226 / 3e-74 AT3G57810 301 / 5e-101 Cysteine proteinases superfamily protein (.1.2.3) Potri.006G057400 [exp] 216 / 1e-70 AT3G57810 308 / 3e-104 Cysteine proteinases superfamily protein (.1.2.3) Potri.008G026100 [exp] 183 / 4e-58 AT3G57810 197 / 2e-61 Cysteine proteinases superfamily protein (.1.2.3) Potri.010G234300 [exp] 182 / 1e-57 AT3G57810 195 / 9e-61 Cysteine proteinases superfamily protein (.1.2.3) Potri.016G110400 [exp] 74 / 1e-16 AT2G38025 276 / 1e-94 Cysteine proteinases superfamily protein (.1) Potri.010G057750 [exp] 58 / 5e-12 AT3G57810 52 / 1e-09 Cysteine proteinases superfamily protein (.1.2.3) Potri.009G160100 [exp] 49 / 4e-07 AT2G27350 440 / 3e-150 otubain-like deubiquitinase 1, OTU-like cysteine protease family protein (.1.2.3.4.5.6) Potri.004G196800 [exp] 42 / 8e-05 AT2G27350 458 / 3e-157 otubain-like deubiquitinase 1, OTU-like cysteine protease family protein (.1.2.3.4.5.6) Potri.005G140500 [exp] 41 / 0.0002 AT5G67170 401 / 3e-139 SEC-C motif-containing protein / OTU-like cysteine protease family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF02338 [flax] [poplar] OTU OTU-like cysteine protease
Representative CDS sequence Show only first row Show all	>Lus10037002 pacid=23171317 polypeptide=Lus10037002 locus=Lus10037002.g ID=Lus10037002.BGIv1.0 annot-version=v1.0 ATGGATTGTGGGTTAGGTTGGTTCTTGAATTTCTGGATACCAGGAGATGGGAGGTGCTTGTTCAGGTCCGTAGCTCACGGTGCTTGTCTTCGAGCGGGGA AGCCATCCCCTAGCGAAACCGTCGAGAAAGAACTTGCTGATGAGCTCAGAGATGAGGTTGCTGACGAGTTCATCAAGAGAAGGAAGGAGACTGAATGGTT CATTGAGGATGATTTTGATGAATATGTTGGACACATGAGACAGCCTCATGTCTGGGGAGGAGAGCCTGAGCTACTTATGTCCTCTCATGTCCTAAAGACG CCGATCTCTGTTTACATGAACGATAAGAGCTCCGGAACCCTGAAGGTTATAGCAGAATATGGCCAGGAGTATGGGAAGGATGTCCCGATTCGTGTACTGT ACCATGGTTATGGCCATTACGATGCTCTTCGAAGCTCGGTCTCCAGTTCGGAATCGAAACCGTGA
AA sequence Show only first row Show all	>Lus10037002 pacid=23171317 polypeptide=Lus10037002 locus=Lus10037002.g ID=Lus10037002.BGIv1.0 annot-version=v1.0 MDCGLGWFLNFWIPGDGRCLFRSVAHGACLRAGKPSPSETVEKELADELRDEVADEFIKRRKETEWFIEDDFDEYVGHMRQPHVWGGEPELLMSSHVLKT PISVYMNDKSSGTLKVIAEYGQEYGKDVPIRVLYHGYGHYDALRSSVSSSESKP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G57810			Cysteine proteinases superfami...		Lus10037002 [exp]	0	1
AT4G10955			alpha/beta-Hydrolases superfam...		Lus10001819 [exp]	4.5	0.8666
AT2G17700		STY8	serine/threonine/tyrosine kina...		Lus10004153 [exp]	9.1	0.8728
AT1G07400			HSP20-like chaperones superfam...		Lus10022604 [exp]	9.4	0.8718
AT2G24220		ATPUP5	purine permease 5 (.1.2)		Lus10022148 [exp]	9.5	0.8416
AT5G06800	GARP		myb-like HTH transcriptional r...		Lus10023816 [exp]	10.5	0.8713
AT3G15010			RNA-binding (RRM/RBD/RNP motif...		Lus10021035 [exp]	11.8	0.8669
AT5G25752		ATRBL11	ARABIDOPSIS RHOMBOID-LIKE PROT...		Lus10022131 [exp]	12.4	0.7573
AT3G10300			Calcium-binding EF-hand family...		Lus10031049 [exp]	13.2	0.8174
AT1G77290			Glutathione S-transferase fami...		Lus10042756 [exp]	15.5	0.8393
					Lus10005647 [exp]	16.5	0.7274

Compare expression of checked genes

Lus10037002 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.