Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67540 62 / 3e-11 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006428 [exp] 146 / 9e-43 AT1G67540 59 / 1e-10 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G177300 [exp] 115 / 2e-29 AT1G67540 84 / 1e-18 unknown protein Potri.010G057800 [exp] 112 / 1e-28 AT1G67540 87 / 1e-19 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10037003 pacid=23171279 polypeptide=Lus10037003 locus=Lus10037003.g ID=Lus10037003.BGIv1.0 annot-version=v1.0 ATGGATTCCAGGAAGCGTCCATTGCAGACCTGTGCTATCTCGCTCCTGGAAATTGCTAATAAGCTATACACGTCTGCAATCCTGAAGAACTTCAATGGCA GAGTTGATCCTTCGTTAGCTTCTTCTCTGTGGATTATCTACTCGTTACGATGTCAGTTACTCGCGATCCTGGCGTTCGTGGACGATTGGATCCTGAGCCT GGAAAGCTTGGCTGAGACGATCTTCCCACCGCTGACGAAATTATTTGACAGGATTGATGGGGTTGTTCAGGAAGCAGAGGGTTTACCTCCGAAGCTTGAT GGTTGTATCGAAAAGCTTTCGGATTTGGTTCGACAGGTTCCGTTACTCGATCGGGTTCTGATTTACTCGGTTTCGTTGGTCGAATTTTTGTTGTACGTGT TGCATCAGTGGGGAGGCTTGAAGAAAGAGGAAGTCGATGTTGCTTGTAAATCAGAAAAACAGAAATTCGAACAAGCATACGGTCATCAGGAATTGAATAC GAACAGCAACAAATGGGAAAATGTTCAGAAAAACGATCATCCGTCGTCGGGTACGTGGTCATCGACGAATGTTTCGGAGACGGACGATACAGCTACAGAT TCGGATTGCAGTGGAACCAAGTCGGGCCGTGAGAACACGGTACAATTCCTGAAAGAAGCTGAGGATTCTTCAGAGTCAGGCTGGGGAAAGGCGGTGAAAG GAAGTTACGAGGATCTTCTGGAGAAGGCTGACAGAGAAGAGGAAATGATGAAGAACAAAGGAAGAAGACAAAGCAGGAATAATAAGAACAAGGGATCAAA AGGAGTTCATCAGGAAGAAATTACCAGAGAAGTGGCGTTGCTGAAAGGGAGAAGGAAAGGGAAGAGGAAGAAGATGAGGATGGATAATAAGTAA
AA sequence Show only first row Show all	>Lus10037003 pacid=23171279 polypeptide=Lus10037003 locus=Lus10037003.g ID=Lus10037003.BGIv1.0 annot-version=v1.0 MDSRKRPLQTCAISLLEIANKLYTSAILKNFNGRVDPSLASSLWIIYSLRCQLLAILAFVDDWILSLESLAETIFPPLTKLFDRIDGVVQEAEGLPPKLD GCIEKLSDLVRQVPLLDRVLIYSVSLVEFLLYVLHQWGGLKKEEVDVACKSEKQKFEQAYGHQELNTNSNKWENVQKNDHPSSGTWSSTNVSETDDTATD SDCSGTKSGRENTVQFLKEAEDSSESGWGKAVKGSYEDLLEKADREEEMMKNKGRRQSRNNKNKGSKGVHQEEITREVALLKGRRKGKRKKMRMDNK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G67540			unknown protein		Lus10037003 [exp]	0	1
					Lus10041943 [exp]	2.4	0.8950
					Lus10011342 [exp]	2.4	0.8939
AT1G18010			Major facilitator superfamily ...		Lus10043371 [exp]	7.9	0.8557
AT1G05510			Protein of unknown function (D...		Lus10022586 [exp]	8.9	0.8630
AT3G20410		CPK9	calmodulin-domain protein kina...		Lus10032640 [exp]	9.4	0.8709
AT3G15420			Transcription factor TFIIIC, t...		Lus10023017 [exp]	9.8	0.8169
AT4G19840		AtPP2A-1, ATPP2...	phloem protein 2-A1 (.1)		Lus10018304 [exp]	12.0	0.8613
AT5G27690			Heavy metal transport/detoxifi...		Lus10033469 [exp]	12.0	0.8797
AT5G14930		GENE101, SAG101	senescence-associated gene 101...		Lus10032169 [exp]	13.6	0.8626
AT1G71050		HIPP20	heavy metal associated isopren...		Lus10032446 [exp]	13.7	0.8303

Compare expression of checked genes

Lus10037003 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.