Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24330 1004 / 0 ARM repeat superfamily protein (.1) AT1G27910 989 / 0 ATPUB45 ARABIDOPSIS THALIANA PLANT U-BOX 45, plant U-box 45 (.1) AT1G67530 976 / 0 ARM repeat superfamily protein (.1.2) AT3G46510 191 / 3e-51 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) AT5G67340 190 / 8e-51 ARM repeat superfamily protein (.1) AT2G28830 158 / 1e-39 AtPUB12 PLANT U-BOX 12 (.1) AT5G42340 133 / 3e-32 PUB15 Plant U-Box 15 (.1) AT4G36550 127 / 6e-30 ARM repeat superfamily protein (.1) AT1G29340 125 / 1e-29 ATPUB17, PUB17 ARABIDOPSIS THALIANA PLANT U-BOX 17, plant U-box 17 (.1) AT1G23030 125 / 1e-29 PUB11 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015801 [exp] 1538 / 0 AT1G24330 1027 / 0.0 ARM repeat superfamily protein (.1) Lus10006427 [exp] 1218 / 0 AT1G24330 993 / 0.0 ARM repeat superfamily protein (.1) Lus10011370 [exp] 1193 / 0 AT1G24330 1000 / 0.0 ARM repeat superfamily protein (.1) Lus10028307 [exp] 278 / 2e-82 AT4G36550 417 / 1e-135 ARM repeat superfamily protein (.1) Lus10041754 [exp] 275 / 5e-81 AT4G36550 404 / 6e-131 ARM repeat superfamily protein (.1) Lus10007511 [exp] 183 / 1e-48 AT3G46510 397 / 2e-129 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10043471 [exp] 159 / 2e-40 AT1G71020 682 / 0.0 ARM repeat superfamily protein (.1.2) Lus10034113 [exp] 157 / 4e-39 AT3G59770 1913 / 0.0 ARABIDOPSIS THALIANA SUPPRESSOR OF ACTIN 9, sacI homology domain-containing protein / WW domain-containing protein (.1.2.3) Lus10006090 [exp] 153 / 1e-38 AT5G01830 764 / 0.0 ARM repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G058000 [exp] 1137 / 0 AT1G24330 1079 / 0.0 ARM repeat superfamily protein (.1) Potri.008G177100 [exp] 1089 / 0 AT1G24330 1025 / 0.0 ARM repeat superfamily protein (.1) Potri.007G023700 [exp] 332 / 6e-102 AT1G67530 328 / 9e-101 ARM repeat superfamily protein (.1.2) Potri.005G122100 [exp] 312 / 8e-94 AT4G36550 441 / 2e-143 ARM repeat superfamily protein (.1) Potri.005G228100 [exp] 243 / 3e-69 AT4G36550 329 / 5e-102 ARM repeat superfamily protein (.1) Potri.002G009900 [exp] 197 / 1e-53 AT5G42340 763 / 0.0 Plant U-Box 15 (.1) Potri.010G113900 [exp] 168 / 9e-44 AT1G23030 732 / 0.0 ARM repeat superfamily protein (.1) Potri.008G128600 [exp] 164 / 1e-42 AT1G23030 697 / 0.0 ARM repeat superfamily protein (.1) Potri.016G134000 [exp] 139 / 5e-34 AT5G01830 702 / 0.0 ARM repeat superfamily protein (.1) Potri.009G029600 [exp] 129 / 9e-31 AT3G46510 935 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF04564 [flax] [poplar] U-box U-box domain CL0020 [flax] [poplar] TPR PF05804 [flax] [poplar] KAP Kinesin-associated protein (KAP)
Representative CDS sequence Show only first row Show all	>Lus10037005 pacid=23171067 polypeptide=Lus10037005 locus=Lus10037005.g ID=Lus10037005.BGIv1.0 annot-version=v1.0 ATGATGGATATTACCGAAGTCGAAGAAAGTCTTTTTGCAGCAACTGATGCAAAGTTACATGGAGACATGTGCAAAGCTTTGTCAGCAATCTATTGCAAGA TCTTGTCAGTTTTCCCCTCCTTGGAAGCTGCTAGGCCTAGGAGCAAGTCTGGGATACAGGCACTATGTTCGTTGCATATTGCACTTGAGAAGGCTAAAAA TGTTCTCCAGCATTGTTCAGAATCCAGCAAACTCTACTTGGCTATAACTGCAGATTCTGTCCTTCTAAAGTTTGAAAGGGCAAGGTCTGCCCTTGTAGAT GGCCTTAGGCGAGTTGAGGATATCGTTCCGCAGTCTATTGGGTGTCAGATTTTGGAGATCATAAATGAGCTTGAAGGGCTCTCATTTTCAGTTGATCCAT TGGAGAAGCAAATTGGGGATGAGATAATTTCTTTGCTTCAGCAAGGGAGAAAGTTTGACAACTGCAGCGACAGTAACGAGCTGGAATCCTTTCATCAGGC TGCTACCAAGCTAGGTATTACCTCTTCGAGGACAGCTCTGACAGAGAGGAGGTGTCTCAAGAAGCTCATTGATAGAGCTCGTGTGGAGGAAGACAAGAGG AAGGAGTCAATTGTGGCCTACCTCTTGCATCTCATGAGGAAATATTCCAAGTTATTCAGAAGTGACCTTGGAGACGATAATGATTCACAGGGATCAGCTC CATGTTCGCCCACGATAGTAGGTTCGCTTGAGGATAATCACCCATTCGACCGCCATCTCTCAAAGCTCAGCTCTTTCAATTTCAAGACTAACTTTAGGAG GTCTGGTCCGATGTCTATTCCACCCGAGGAATTGAGGTGTCCGATATCGCTGCAGCTCATGTATGATCCAGTTGTCATTGCTTCGGGGCAAACATATGAG AGGATATGCATTGAGAAGTGGCTTAGTGATGGTCACGACACATGTCCAAAGTCTCAACAGAAGTTGCCTCATTTGTCTTTGTCTCCAAACTACTGTGTCA AAGGACTGGTATCCAGCTGGTGTGAACAAAATGGAGTTCCAGTTCCAGAGGGTCCTCCAGAATCTCTGGACCTGAACTATTGGCGCCTAGTCTTGTCCCA ATCTGATTCCAAATCAAGGCCTTCTGACAATGCTGACCTGTTGAAGGGTGCTAAAGTAGTTCCTTTCGAGGAAAGCAGAACCATCGAGGAGGCCGACGAA AGCCATCCAGAACGTGCATATCCGCAACATGAAGATATTCCCGAGGAAGACTCTGAACTCGATATGCTGAAAAGATACCAAGACTTTCTGACTGTATTGA ATGATAATGATGAAAACTTGCACAGAAAGTGCAAGGTAGTTGAAGAAGTCAGGTTCTTGCTGAAGGATGATGAGGAGGCAAGGATTTACATGGGTGCTAA TGGATTTGTCGAGGCACTTCTGCAGTTTCTGCAGTCGGCTGTCCGTACTAGGAACGCTTCGGCTCAGGATAGTGTCGCCATGGCTCTCTTCAACCTTGCA GTCAACAACAACAGAAACAAAGAAATGATGCTAGCTGCCGGAATCATCCCATTGCTGGAGGAGATGATCTCTTGCTCAGACTCCATCGGATCAGCAACTG CCCTCTACCTGAATCTATCCTGCCTCGAGGAAGCGAAATCCGTCATAGGATCAAGTCTAGCAGTCCCATTCTTAACCCAGATCCTTCAAGGACAGGATCA TCCAACCCAATGCAAACTCGACGCCTTACACGCCGTCTTCAACCTCTCCTCGAACCCATCAAACATCACGAACCTCCTCTCCGCTGGAATCGTCAACAGC CTGCAATCCCTCCTCACCACCCAAGCCGACAACCAAACCTGGACCGAAAAGGCCATAGCGGTAATGCTCAACCTATGCACCAGCGAATCAGGGAAAGCAG AGATCGTCACATCCACCGGTCTCATCACTGCAATCGCGTCGCTACTAGACATCGGCGAAGCAGTCGAGCAGGAACAAGCGGTGGCATGTCTCTACATGCT ATGCAACGGCAACGAATTATGCAGTCAGATGGTGTTACAAGAAGGTGTGATTCCTGCATTGGTCTCGATCTCCGTCAATGGCACCTCAAGAGGGAAAGAG AAGGCACAAAAACTGCTGATGCTTTTCCGCGAACAGCGACAGCGAGATCAGCAGCAGCACCAGCAAGAACAACAAGAACAGCAACAAAACCAACAGTCAC CGCCTTATGCTGCTCCTTCTGAACCGGATACACTACCACGAGCGGACAGCAGGTCGTCGAAACGAGCACCGGCTGCAACTGATACGAAGCCGCTGTGTAA AGCAGCATCAAGGAGAAAGATGGGGAAAGCCTTCAGCTTCTTGTGGAAGAGTAAGAACTACTCACTGTACCAATACTGA
AA sequence Show only first row Show all	>Lus10037005 pacid=23171067 polypeptide=Lus10037005 locus=Lus10037005.g ID=Lus10037005.BGIv1.0 annot-version=v1.0 MMDITEVEESLFAATDAKLHGDMCKALSAIYCKILSVFPSLEAARPRSKSGIQALCSLHIALEKAKNVLQHCSESSKLYLAITADSVLLKFERARSALVD GLRRVEDIVPQSIGCQILEIINELEGLSFSVDPLEKQIGDEIISLLQQGRKFDNCSDSNELESFHQAATKLGITSSRTALTERRCLKKLIDRARVEEDKR KESIVAYLLHLMRKYSKLFRSDLGDDNDSQGSAPCSPTIVGSLEDNHPFDRHLSKLSSFNFKTNFRRSGPMSIPPEELRCPISLQLMYDPVVIASGQTYE RICIEKWLSDGHDTCPKSQQKLPHLSLSPNYCVKGLVSSWCEQNGVPVPEGPPESLDLNYWRLVLSQSDSKSRPSDNADLLKGAKVVPFEESRTIEEADE SHPERAYPQHEDIPEEDSELDMLKRYQDFLTVLNDNDENLHRKCKVVEEVRFLLKDDEEARIYMGANGFVEALLQFLQSAVRTRNASAQDSVAMALFNLA VNNNRNKEMMLAAGIIPLLEEMISCSDSIGSATALYLNLSCLEEAKSVIGSSLAVPFLTQILQGQDHPTQCKLDALHAVFNLSSNPSNITNLLSAGIVNS LQSLLTTQADNQTWTEKAIAVMLNLCTSESGKAEIVTSTGLITAIASLLDIGEAVEQEQAVACLYMLCNGNELCSQMVLQEGVIPALVSISVNGTSRGKE KAQKLLMLFREQRQRDQQQHQQEQQEQQQNQQSPPYAAPSEPDTLPRADSRSSKRAPAATDTKPLCKAASRRKMGKAFSFLWKSKNYSLYQY

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G24330			ARM repeat superfamily protein...		Lus10037005 [exp]	0	1
AT5G35160			Endomembrane protein 70 protei...		Lus10005060 [exp]	3.6	0.8897
AT2G30360		PKS5, CIPK11, S...	SNF1-RELATED PROTEIN KINASE 3....		Lus10009103 [exp]	6.3	0.8509
AT5G03760		ATCSLA9, RAT4, ...	RESISTANT TO AGROBACTERIUM TRA...		Lus10035580 [exp]	9.5	0.8564
AT5G35160			Endomembrane protein 70 protei...		Lus10027831 [exp]	14.7	0.8384
AT5G65720		ATNIFS1, NIFS1 ...	NITROGEN FIXATION S HOMOLOG 1,...		Lus10011572 [exp]	14.8	0.8503
AT4G12650			Endomembrane protein 70 protei...		Lus10016072 [exp]	15.6	0.8565
AT2G36330			Uncharacterised protein family...		Lus10032148 [exp]	15.7	0.8488
AT3G15350			Core-2/I-branching beta-1,6-N-...		Lus10043324 [exp]	21.6	0.8497
AT1G78570		ATRHM1, RHM1, R...	REPRESSOR OF LRX1 1, ARABIDOPS...		Lus10013695 [exp]	22.6	0.8340
AT2G22740		SDG23, SUVH6	SET DOMAIN PROTEIN 23, SU(VAR)...		Lus10011049 [exp]	26.0	0.8140

Compare expression of checked genes

Lus10037005 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.