Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67510 452 / 8e-150 Leucine-rich repeat protein kinase family protein (.1) AT2G01210 298 / 5e-91 Leucine-rich repeat protein kinase family protein (.1) AT3G57830 278 / 6e-84 Leucine-rich repeat protein kinase family protein (.1) AT2G42290 273 / 3e-82 Leucine-rich repeat protein kinase family protein (.1) AT1G25320 272 / 2e-81 Leucine-rich repeat protein kinase family protein (.1) AT1G66830 245 / 2e-71 Leucine-rich repeat protein kinase family protein (.1) AT5G67280 203 / 9e-56 RLK receptor-like kinase (.1) AT4G37250 196 / 2e-53 Leucine-rich repeat protein kinase family protein (.1) AT2G15300 196 / 3e-53 Leucine-rich repeat protein kinase family protein (.1) AT2G23300 192 / 5e-52 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015799 [exp] 580 / 0 AT1G67510 959 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10023830 [exp] 277 / 2e-87 AT3G57830 382 / 7e-129 Leucine-rich repeat protein kinase family protein (.1) Lus10021022 [exp] 285 / 8e-87 AT3G57830 639 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10019315 [exp] 270 / 1e-80 AT4G37250 728 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011509 [exp] 270 / 3e-80 AT4G37250 739 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033569 [exp] 258 / 8e-76 AT1G66830 665 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10017611 [exp] 253 / 3e-74 AT1G66830 672 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10034108 [exp] 220 / 4e-62 AT2G01210 860 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10043480 [exp] 217 / 2e-61 AT2G01210 879 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G058200 [exp] 480 / 7e-160 AT1G67510 989 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G176900 [exp] 473 / 6e-158 AT1G67510 923 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G142300 [exp] 321 / 5e-99 AT4G37250 733 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G120100 [exp] 291 / 2e-88 AT2G01210 1013 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G057500 [exp] 289 / 3e-88 AT3G57830 707 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.016G050800 [exp] 285 / 2e-86 AT3G57830 713 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G124300 [exp] 280 / 5e-84 AT2G01210 987 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G095700 [exp] 270 / 2e-80 AT2G01210 735 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G119000 [exp] 268 / 5e-80 AT2G01210 711 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.007G048800 [exp] 206 / 7e-57 AT2G23300 706 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10037006 pacid=23171342 polypeptide=Lus10037006 locus=Lus10037006.g ID=Lus10037006.BGIv1.0 annot-version=v1.0 ATGGGAGTCTCCTGCATGAATGTCTCCGGGTCTTCCGATCCCAGAGTCGTCGGAATCTCCCTCTCCGGCAAGTCCTTGAACGGCTACATCCCGTCGGAGC TCGGAACATTAATCTACCTCCGCCGCCTCAACCTCCACTCCAACAATTTCCACGGCTCCATCCCTTTGCAGCTGTTCAACGCTACTTCTCTCCACAGCTT GTTCCTCTACGGGAATAACCTCACCGGAACCTTACCGCCGTCGATGTGCGACAACGTCCCCCGCCTCCAGAACGTCGACCTGTCTAACAACTCCGTCTCC GGGTCCTTGCCGGAAGAGATCAAAAACTGCCGCCAGCTCCAGCGGCTGATCTTGGCTGGAAACAAATTCTCCGGCGAGATCCCCGCCGGAATTTGGGCGG AATTGGATACACTAGTTCAGCTCGATTTATCCTCCAACGACTTCTCCGGTCCGATCCCGAACGATTTGGGGGAACTGAAGTCGCTGTCGAATACTCTCAA CCTCTCATTCAACCACCTCTCAGGCCGGATTCCGAAATCTCTAGGGAATTTGCCGGTGACGGTGAGCTTCGATCTCCGGAATAATAACTTCAGTGGAGAG ATTCCTCAAACGGGATCGTTTTCGAACCAGGGCCCCACCGCTTTCCTTCAAAACCCTCTCCTTTGTGGCTTCCCTCTCCAAAAGCCTTGTAATAACGAGT CAACGCCGAATTCCTCTGGAGGGGACGGAGACGAGACCGATACGACGTCGTTTGGGGGATCGGATAATAAAAAGGAAGGGCTAAGCTCCGGAGTTATAAT TCTAATCTCAGTAGCCGACGCCGCCGGAGTAGCCTTCATCGGACTAGTGATTGTTTATGTTTACTGGAAGAAGAAGGACGAATCCAACGGCTGCAGCTGC ACAGGGAAAGGAAAATTCGGCGGTGGAGGAGATGGGAAGTTGTTACCAATCTGTGGCGGATTTTTCGGGTGCGGCGGCCGGAGAAGCGAGGATTCGGAGG CGGAGGACGCGGCGGGGGAGAAGTTGGAAGAAGGTGGCGGAGGAGGAGGGAGTGAAGGAGGAGGAGGGGAGTTAGTGGCGATTGACAAAGGGTTTAGTTT CGAGCTAGATGAGCTGCTGAGGGCGTCGGCTTATGTTCTGGGGAAGAGTGGGTTGGGGATTGTGTACAAGGTGGTGCTCGGAAATGGGATTCCGGTGGCG GTGCGGCGGCTAGGGGAAGGAGGGGAACCGAGGTATAAGGAGTTTGTGGCGGAGGTGCAGGCGATTGGGAAGGTGAAACATCCGAATGTGGTGAAGCTGA GGGCTTACTATTGGGCTCCTGATGAGAAGCTGTTGATCAGTGACTTTGTAGCCAATGGGAACTTGGCTACAGCTCTTCGAGGAAGGACTGGTCAACCATC ATCAACCAGCAGCCTCTCATGGTCAACCCGCCTCCGAATCGCAAAGGGAACAGCAAGAGGCCTAGCCTACCTCCACGAATGCAGCCCAAGGAAATTCGTC CATGGCGATATCAAGCCATCCAACATCCTCCTTGACAACGACTTCCAGCCTCGAATCTCCGACTTCGGCCTCAGCCGCCTCGTCACCATCACCGGAGGAG ACAACAACAACCCATCTTCCTCCTCGGGCGGGTTCATGGGCGGAGCACTGCCTTACTTGAAACCCTCCTCATCCCAACCCAACAACAACTACCGCGCCCC TGAAGCTCGAGTCCCGGGGAACAAACCCACCCAGAAGTGGGACGTGTACTCTTTCGGTATTGTTCTGCTCGAACTGCTGACCGGGAAGTCGCCAGAGCTG TCACCGAGTTCGAGCTCGTCGATGGAGGTTGTGGATCTTGTGAGGTGGGTGAGGAAAGGGTTTGAGGAAGAGAACCCTCTGTCTGAAATGGTGGATCATA GCTTGTTACAGGAGGTTCATGCTAAGAAGGAAGTTCTGGCTGTTTTCCATTTGGCGATGGGTTGTACTGAGAATGATCCTGAGGTTCGTCCCAGGATGAA GTCTGTTTCCGAGAGTATTGACAGGATTGGGTCGTGA
AA sequence Show only first row Show all	>Lus10037006 pacid=23171342 polypeptide=Lus10037006 locus=Lus10037006.g ID=Lus10037006.BGIv1.0 annot-version=v1.0 MGVSCMNVSGSSDPRVVGISLSGKSLNGYIPSELGTLIYLRRLNLHSNNFHGSIPLQLFNATSLHSLFLYGNNLTGTLPPSMCDNVPRLQNVDLSNNSVS GSLPEEIKNCRQLQRLILAGNKFSGEIPAGIWAELDTLVQLDLSSNDFSGPIPNDLGELKSLSNTLNLSFNHLSGRIPKSLGNLPVTVSFDLRNNNFSGE IPQTGSFSNQGPTAFLQNPLLCGFPLQKPCNNESTPNSSGGDGDETDTTSFGGSDNKKEGLSSGVIILISVADAAGVAFIGLVIVYVYWKKKDESNGCSC TGKGKFGGGGDGKLLPICGGFFGCGGRRSEDSEAEDAAGEKLEEGGGGGGSEGGGGELVAIDKGFSFELDELLRASAYVLGKSGLGIVYKVVLGNGIPVA VRRLGEGGEPRYKEFVAEVQAIGKVKHPNVVKLRAYYWAPDEKLLISDFVANGNLATALRGRTGQPSSTSSLSWSTRLRIAKGTARGLAYLHECSPRKFV HGDIKPSNILLDNDFQPRISDFGLSRLVTITGGDNNNPSSSSGGFMGGALPYLKPSSSQPNNNYRAPEARVPGNKPTQKWDVYSFGIVLLELLTGKSPEL SPSSSSSMEVVDLVRWVRKGFEEENPLSEMVDHSLLQEVHAKKEVLAVFHLAMGCTENDPEVRPRMKSVSESIDRIGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G67510			Leucine-rich repeat protein ki...		Lus10037006 [exp]	0	1
AT2G28315			Nucleotide/sugar transporter f...		Lus10037397 [exp]	1.4	0.9826
AT1G67510			Leucine-rich repeat protein ki...		Lus10015799 [exp]	2.0	0.9806
AT2G28315			Nucleotide/sugar transporter f...		Lus10021464 [exp]	2.4	0.9791
AT2G40320		TBL33	TRICHOME BIREFRINGENCE-LIKE 33...		Lus10017428 [exp]	5.7	0.9665
AT1G79620			Leucine-rich repeat protein ki...		Lus10023848 [exp]	5.9	0.9760
AT2G17940			Plant protein of unknown funct...		Lus10041916 [exp]	6.3	0.9785
AT1G68795		CLE12	CLAVATA3/ESR-RELATED 12 (.1)		Lus10041496 [exp]	7.1	0.9604
AT4G11950			Protein of unknown function (D...		Lus10014138 [exp]	7.2	0.9653
AT5G02640			unknown protein		Lus10025282 [exp]	8.5	0.9659
AT5G60020		LAC17, ATLAC17	laccase 17 (.1)		Lus10019122 [exp]	8.5	0.9671

Compare expression of checked genes

Lus10037006 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.