Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78800 665 / 0 UDP-Glycosyltransferase superfamily protein (.1) AT5G37180 69 / 2e-12 ATSUS5, SUS5 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 5, sucrose synthase 5 (.1) AT4G02280 68 / 6e-12 ATSUS3, SUS3 sucrose synthase 3 (.1) AT2G40190 64 / 8e-11 LEW3 LEAF WILTING 3, UDP-Glycosyltransferase superfamily protein (.1) AT5G49190 64 / 1e-10 ATSUS2, SSA, SUS2 SUCROSE SYNTHASE FROM ARABIDOPSIS, sucrose synthase 2 (.1) AT1G73370 56 / 5e-08 ATSUS6, SUS6 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) AT4G10120 53 / 3e-07 ATSPS4F Sucrose-phosphate synthase family protein (.1.2) AT5G20830 52 / 6e-07 ASUS1, ATSUS1, SUS1 sucrose synthase 1 (.1.2) AT1G04920 51 / 1e-06 ATSPS3F sucrose phosphate synthase 3F (.1) AT1G75420 49 / 4e-06 UDP-Glycosyltransferase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015797 [exp] 791 / 0 AT1G78800 652 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10013417 [exp] 76 / 2e-14 AT4G02280 1162 / 0.0 sucrose synthase 3 (.1) Lus10001468 [exp] 73 / 2e-13 AT4G02280 1385 / 0.0 sucrose synthase 3 (.1) Lus10010308 [exp] 67 / 9e-12 AT5G49190 1318 / 0.0 SUCROSE SYNTHASE FROM ARABIDOPSIS, sucrose synthase 2 (.1) Lus10017984 [exp] 62 / 6e-10 AT1G73370 1117 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) Lus10041979 [exp] 62 / 7e-10 AT1G73370 1190 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) Lus10008206 [exp] 56 / 6e-09 AT4G02280 323 / 1e-106 sucrose synthase 3 (.1) Lus10020791 [exp] 58 / 1e-08 AT1G73370 1200 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) Lus10007372 [exp] 57 / 2e-08 AT1G73370 1195 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G109000 [exp] 684 / 0 AT1G78800 663 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.001G393000 [exp] 450 / 1e-158 AT1G78800 427 / 5e-150 UDP-Glycosyltransferase superfamily protein (.1) Potri.004G081300 [exp] 68 / 5e-12 AT1G73370 1234 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) Potri.002G202300 [exp] 68 / 6e-12 AT4G02280 1439 / 0.0 sucrose synthase 3 (.1) Potri.015G029100 [exp] 64 / 1e-10 AT1G73370 1289 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) Potri.012G037200 [exp] 63 / 2e-10 AT1G73370 1284 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) Potri.017G139100 [exp] 63 / 2e-10 AT5G37180 1231 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 5, sucrose synthase 5 (.1) Potri.018G063500 [exp] 54 / 2e-07 AT3G43190 1410 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 4, sucrose synthase 4 (.1) Potri.006G136700 [exp] 54 / 2e-07 AT3G43190 1375 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 4, sucrose synthase 4 (.1) Potri.018G124677 [exp] 53 / 3e-07 AT5G20280 1601 / 0.0 sucrose-phosphate synthase A1, sucrose phosphate synthase 1F (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00534 [flax] [poplar] Glycos_transf_1 Glycosyl transferases group 1
Representative CDS sequence Show only first row Show all	>Lus10037008 pacid=23171203 polypeptide=Lus10037008 locus=Lus10037008.g ID=Lus10037008.BGIv1.0 annot-version=v1.0 ATGGAGTCCAGACAAAGCTCCAAGTTGAATATAGCCATTCTTCATCCTGACCTTGGGATCGGTGGGGCTGAGAGGTTGGTTGTTGATGCAGCAGTTGAAC TTGCATCCCGAGGTCACAAAGTTCATATATTTACCGCTCACCATGATAAAAACAGATGCTTTGAGGAAACTCTTGCTGGCACGTTTCCGGTTACTGTCTA TGGTTCGTTCCTCCCCCGACATGTATTCTACCGCTTTCATGCTGTATGTGCATATCTCCGGTGCCTTTTTGTTGCACTCGCATTACTCTTCCTTTGGCCA TCCTTCGATGTCATACTCGTCGATCAAGTATCTGTCGTTATTCCGTTGTTGAAACTTAAAAGAGCAACCAAGGTGGTCTTTTACTGTCATTTTCCAGACC TTTTGTTAGCTCAACACACAACTACTCTCCGAAGGCTATATCGAAAACCCATTGACTTCATCGAAGAGATCACTACTGGAATGGCGGACATGATACTTGT TAACAGCAAGTTCACTGCTTCCACGTTTGCTCGAACATTTCAGCATCTTTACTCAAAAGGCATCCGACCGGCAGTTTTGTATCCAGCTGTGAATCTCGAC CAGTTTAATGAACCTCATTCTTTTAAGTTGAATTTTCTTTCCATCAACCGCTTTGAGAAGAAAAAGAACATAGAATTAGCTATTTCAGCCTTCGCCAAGC TTCATTCCTCCGGGGAGCTTGCAGACAATAAGCTGAAGGATGCATCTTTGACTGTTGCAGGTGGATACGACGAACGACTGAGAGAGAACGTGGAGTACTT GGAGGAGCTAAGAGCATTAGCAAAAAGGGAAGGAGTATCTGACCAAGTCAAGTTCGTGACATCTTGTTCCACAGCAGAAAGAAACGATCTCCTCGCAGAT TGTCTCTGTGTAATCTACACTCCAAAGGATGAACACTTTGGTATTGTTCCACTGGAGGCAATGGCGGCTCATAAACCGGTAATTGCATGTAACAGTGGAG GCCCCGTGGAGACGATAAGGGATGGAGTGACAGGGTTCCTCTGTGATCCAACTCCTCAGGAATTCTCGTCAGCCATGGCTAAGTTCCTCGAGGATCCGGA GGTGGCGAAGCATATGGGCGGGGAGGCCAGGCGACATGTGGCAGATTCGTTCTCTACGCATATTTTCGGGCAAAGTCTGAATCAGTATGTTACTGACATT GCCGGCTGTAGTAAGCAAGACTGA
AA sequence Show only first row Show all	>Lus10037008 pacid=23171203 polypeptide=Lus10037008 locus=Lus10037008.g ID=Lus10037008.BGIv1.0 annot-version=v1.0 MESRQSSKLNIAILHPDLGIGGAERLVVDAAVELASRGHKVHIFTAHHDKNRCFEETLAGTFPVTVYGSFLPRHVFYRFHAVCAYLRCLFVALALLFLWP SFDVILVDQVSVVIPLLKLKRATKVVFYCHFPDLLLAQHTTTLRRLYRKPIDFIEEITTGMADMILVNSKFTASTFARTFQHLYSKGIRPAVLYPAVNLD QFNEPHSFKLNFLSINRFEKKKNIELAISAFAKLHSSGELADNKLKDASLTVAGGYDERLRENVEYLEELRALAKREGVSDQVKFVTSCSTAERNDLLAD CLCVIYTPKDEHFGIVPLEAMAAHKPVIACNSGGPVETIRDGVTGFLCDPTPQEFSSAMAKFLEDPEVAKHMGGEARRHVADSFSTHIFGQSLNQYVTDI AGCSKQD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G78800			UDP-Glycosyltransferase superf...		Lus10037008 [exp]	0	1
AT5G47960		SMG1, AtRABA4c	SMALL MOLECULAR WEIGHT G-PROTE...		Lus10014732 [exp]	20.4	0.6435
AT4G40042			Microsomal signal peptidase 12...		Lus10037011 [exp]	67.1	0.5657
AT5G45160			Root hair defective 3 GTP-bind...		Lus10018281 [exp]	113.6	0.5372

Compare expression of checked genes

Lus10037008 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.