Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67490 1032 / 0 KNOPF, KNF, GCS1 KNOPF, glucosidase 1 (.1.2) AT1G24320 943 / 0 Six-hairpin glycosidases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015796 [exp] 1392 / 0 AT1G67490 1014 / 0.0 KNOPF, glucosidase 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G059000 [exp] 1155 / 0 AT1G67490 1132 / 0.0 KNOPF, glucosidase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0059 [flax] [poplar] 6_Hairpin PF03200 [flax] [poplar] Glyco_hydro_63 Glycosyl hydrolase family 63 C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10037009 pacid=23171275 polypeptide=Lus10037009 locus=Lus10037009.g ID=Lus10037009.BGIv1.0 annot-version=v1.0 ATGACAGGAGCCTGCCGGCGAACAGCTCGAAGCAGCAAAGGAAAGTCCTCATTGGACGACGGCAACGACGACGGCGATGTTTCTCGTCGTAGCTCGAGGA CGAGCTCGAAATCACGCAAGGATAATAAGAGACGAGACGGAAGCAGCAGCAGCAGCTTGGTTCGTATGCTTAACCTTGACTTGAAAGTCATGATGGCCGT TTGCGGAGCAGCTTCTTTGATCATCTTCTTCCTGATTTACAATCTGATGATAATCCCCGTCGAAGTTTCTCGGAGGCCTAACGTTGTTACTCCATTTCCT TCTCCAAAGCTCATGGACCTTCCTCAGTTTCAAGGAGAGCATAAGGAGAGCTTGTATTGGGGAACTTATCGTCCTCAAGTTTATTTTGGTGTTCGTGCTA GGACGCCAAAATCATTGGTTGCTGGTTTGATGTGGTTAGGTGTAAAGGATGGAAGATATGAAATACGCCATGTGTGCCAAAACTCGGACGATTTGAGCAA GTACGGGTGGATTGCGCATAATGGTCGTGATTTCGGGAAGCAGGAGCTAGTTGAGCAGGAGCTGAAGTTGGAGACCAGTTTCTTGAAGTCCAGGAGTCAA GGCAGTGGTTATGGTGGAGATTGGGCTGTCCAAATCGATATGCAACATGAAAAATCTGGATCAAGTAATGAATTACTGACAACGGGTCACTTATTTTTCT ATTTGGCGGATGAGAGTGGCAATGCTCTAAGTCTGAGCAAGAATGCCAACAATAATCACGAGACTTCTCTCCTGGCATCAGGTTCACGAGCAGACGTTGG AGAGTGGCAGGTTCATTTGAATTCAAAGGACATGTTGGAGGTTCACCATTCTGGTTTCAGGACTCCTCACATTCATAATCTATCTGATTTTGTTCTGCAA GATCTTGGCATGCAGTTAAGGGATTTTGGTCGTCTACAGTTGCCCGACTCATCTGAAAATTCTGCAAACATTCTAGTTTTCCAGGTATCTGCAAGGATTC CATTTAGGACAGATATTGTCTTTGTATCTAGAACTGGAAAGAAAGATTCAAGACCAGAACAACGTGTGAGCAGCCTAACAGGTGCTTCACTGAGCAGTCA GCTAAAGCAGAAGCAAACAGAATTTGACTCGAAGTTTGAGCAGCTCTTCAATGGAGCCAACAAACTGGAAACTGAGTCCACTGTTGTTGGTAAGGCTGCT ATTGCCAATATGCTGGGAGGCATTGGTTACTTCTATGGACAATCAAAGATCGCTTATCCTAATCGCGACACGTTTATTTCATATTGGCCGGCTGAGCTGT ATACTGCTGTGCCAAGTCGACCTTTCTTTCCAAGAGGTTTTCTATGGGATGAAGGTTTTTATCAACTACTGATCTGGCGCTGGGACCTCCGTATATCTTT AGATATCGTTGGCCACTGGTTAGACCTGATCAATATCGATGGTTGGATTCCTCGTGAGCAAATACTCGGTTCTGAAGCTCGTAGCAAGGTTCCAGAGGAG TTTATTCCTCAGTACCCAAGCAACGGAAATCCTCCAACTCTCTTTTTGGTTATCAACGATCTGCTTGTTGGAATAGAGAAAAACTTGTTCACGGATGTTG AACGCAGAGATATTACTTTCTTTCTGGAGCGGGCTTTTGTTCGTCTTGAAGCTTGGTACCAGTGGTTTGCTACTACACAATCAGGGAAGCAGATGAGCAG CTACTTTTGGCATGGTAGAGATAATAGGACAACTCGTGAATTGAATCCGAAGACTCTATCATCAGGATTGGATGACTATCCTCGTGCTTCGCATCCGAAT GATGACGAACGTCATGTTGATCTTCGGTGTTGGATGCTTCTCGCTGCTAGATGCATGCAATCCATCGCAAAGTTCTTTGAGAATGGAAACAGCCCTGGAA AGGAATATGCTTCAACAGTGGAACTGCTTTCGGATCTCGAGTTGCTGAATGAGATACACCTTGACCCAACCAGTGGAGCTTATTTTGATTTTGGAAATCA TACAGAAAAGCTTCTTTCAGTTGTGGAAGGGTGGTTGGAAATGCTTACACTTTTCTCGAACTTGCTAGGTTCGTTTGAGTTGGAAAGTGATCAGAGACGG AAACAACCACGCCAGGCGAGAGCTTGTCCGAGAGGTTTTAGAAACTCCGAATTGAGGCTGGTTTCTCATGTTGGCTTTGGTAGCTTATTCCCATTCATGG GGAAGATCATCCCACCTGATTCATGGATTCTCGAGAAACAGCTCGATATGATTTCTAATCGCAGCGTTCTGTGGTCAAACTATGGACTCCATTCTCTTGC CAGAACAAGCTCAATATATATGAAACGCAACACAGAGCACGACGCACCTTACTGGAGAGGCCCTATCTGGATGAACATGAACTACATGGCACTTTCTGCG CTACACCATTATTCCAAAGCAGATGGACCATACAGAGAAAGAGCTGGCCAAATATACAGAGATCTGAGAAGTAATTTGATAAGAAATGTGGTTCACAATT ATCACCAAACGGGGTATCTCTGGGAACAATATGACCAGATGAATGGCAAAGGACAAGGAACTCGTCTCTTTACCGGTTGGACCGCACTCGTGCTACTAAT CATGGGTGAAGCTTATACATGA
AA sequence Show only first row Show all	>Lus10037009 pacid=23171275 polypeptide=Lus10037009 locus=Lus10037009.g ID=Lus10037009.BGIv1.0 annot-version=v1.0 MTGACRRTARSSKGKSSLDDGNDDGDVSRRSSRTSSKSRKDNKRRDGSSSSSLVRMLNLDLKVMMAVCGAASLIIFFLIYNLMIIPVEVSRRPNVVTPFP SPKLMDLPQFQGEHKESLYWGTYRPQVYFGVRARTPKSLVAGLMWLGVKDGRYEIRHVCQNSDDLSKYGWIAHNGRDFGKQELVEQELKLETSFLKSRSQ GSGYGGDWAVQIDMQHEKSGSSNELLTTGHLFFYLADESGNALSLSKNANNNHETSLLASGSRADVGEWQVHLNSKDMLEVHHSGFRTPHIHNLSDFVLQ DLGMQLRDFGRLQLPDSSENSANILVFQVSARIPFRTDIVFVSRTGKKDSRPEQRVSSLTGASLSSQLKQKQTEFDSKFEQLFNGANKLETESTVVGKAA IANMLGGIGYFYGQSKIAYPNRDTFISYWPAELYTAVPSRPFFPRGFLWDEGFYQLLIWRWDLRISLDIVGHWLDLINIDGWIPREQILGSEARSKVPEE FIPQYPSNGNPPTLFLVINDLLVGIEKNLFTDVERRDITFFLERAFVRLEAWYQWFATTQSGKQMSSYFWHGRDNRTTRELNPKTLSSGLDDYPRASHPN DDERHVDLRCWMLLAARCMQSIAKFFENGNSPGKEYASTVELLSDLELLNEIHLDPTSGAYFDFGNHTEKLLSVVEGWLEMLTLFSNLLGSFELESDQRR KQPRQARACPRGFRNSELRLVSHVGFGSLFPFMGKIIPPDSWILEKQLDMISNRSVLWSNYGLHSLARTSSIYMKRNTEHDAPYWRGPIWMNMNYMALSA LHHYSKADGPYRERAGQIYRDLRSNLIRNVVHNYHQTGYLWEQYDQMNGKGQGTRLFTGWTALVLLIMGEAYT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G67490		KNOPF, KNF, GCS...	KNOPF, glucosidase 1 (.1.2)		Lus10037009 [exp]	0	1
AT1G15215		SHH1, DTF1	SAWADEE homeodomain homolog 1,...		Lus10025826 [exp]	7.1	0.7534
AT5G27410			D-aminoacid aminotransferase-l...		Lus10029984 [exp]	13.2	0.7671
AT2G13600			Pentatricopeptide repeat (PPR)...		Lus10032363 [exp]	19.5	0.7054
AT2G16460			Protein of unknown function (D...		Lus10042073 [exp]	28.4	0.7032
AT2G35035		URED	urease accessory protein D (.1...		Lus10007861 [exp]	45.6	0.7210
AT5G41370		XPB1, ATXPB1	ARABIDOPSIS HOMOLOG OF XERODER...		Lus10032287 [exp]	51.4	0.7042
AT3G11620		BAS1	alpha/beta-Hydrolases superfam...		Lus10021300 [exp]	55.1	0.7179
AT5G21080			Uncharacterized protein (.1)		Lus10016400 [exp]	60.7	0.6981
AT1G75340	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10040585 [exp]	69.3	0.6531
AT5G48440			FAD-dependent oxidoreductase f...		Lus10025858 [exp]	80.3	0.6377

Compare expression of checked genes

Lus10037009 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.