Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24310 420 / 3e-146 unknown protein AT3G32904 42 / 0.0005 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015795 [exp] 467 / 7e-165 AT1G24310 404 / 2e-140 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G059100 [exp] 440 / 3e-154 AT1G24310 448 / 1e-157 unknown protein Potri.008G176100 [exp] 405 / 1e-140 AT1G24310 392 / 9e-136 unknown protein Potri.011G148800 [exp] 55 / 7e-08 AT1G10390 606 / 0.0 Nucleoporin autopeptidase (.1.2) Potri.001G453200 [exp] 50 / 2e-06 AT1G10390 684 / 0.0 Nucleoporin autopeptidase (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10037010 pacid=23171059 polypeptide=Lus10037010 locus=Lus10037010.g ID=Lus10037010.BGIv1.0 annot-version=v1.0 ATGTTCGGAACTCCGTCCTCAACACCGGCCTTCGGAACTCCGTCTTCCACACCGGCCTTCGGAACTCCGTCTTCCACTCCAGCATTCGGCACTCCGTCTT CTACTCCGGCGTTCGGAACACAGGGATTCGGAACTCCGGGGTCGAATTCGTTGTTCGGAGCTCCGTCTTCAACTCCGGCGTTCGGCACTCCGTCCACTTC CGCGTTTGGTACGGGATTCGGCTCTTCTCTCTTCTCCACACCATTCTCTGCGCAACAACCTCAACAGCAGCAGCAGCAACAGGCTTCGCCGTTCCAGCAG ACGGGCGGCGGTTTCGGATTTCAGAATCAGTTCTCCGCTCAGCAGCAGCAGCAGCCTACGCCATTTCCTAATGCTCAATTGACTACTCAGATGGCCCCAG TGGCCCCGCTCCCTTACTCCCTCTCCGATCGCGATATCCAGACGATAGTTGACGCTTACAACTACAAGGAGGATGCTGGGAACCCTAAATATGCTTTCAA GCATTTGCTGTTCAGTATTACGGATCCACAGATAAGAATCAAGCCCGCTGATGTATCAGATATTATGTGGGCAGAGGCCATGGGGAAGCTAGAAGGCATG GAGAGTAGAGACCGAGAGCGCCTCTGGCCGCAACTTGTTCAAGGTTTCAAACATCTTTCAGACCGCCTCAAGCTTCAAGATGATGTCATTGCTTCAGATG CCGAGAGATTGCAGACGACCCAAAGCAATGTGAAAATGCTTCAACGGCATATTCAAGCTGAGACACTTCCATGGATCGATAGGCTGAGACAAAAAGAACA AAGTCTCCAGAGACGCCTATTAAGGACAATGCGGATACTAGAAGCGTTGGAGAGTAAGGGTTGCCGATTGCCACTTACTAAAGGAGAAGTCGAATTAGCT GAGAAGCTAGCTTCTGTAGTTAGACAGCTGAAAGGTCCTGGAGCAGAACTGGGCAGGAGGGTGCAGAGCCTTCTAACGATCTCTCGTACCCAAGAAAATG GGTTCAATGGAGGAGCTTTGATGTATCTGCCAGGATCAACCAAGATTGATGAACGGAGTCTAGTGGACATGCAAGAGGTCTTACAACAGCAGACAGAGGC TATTGCAAGGCTTGGAAGTGTGCTAAAGCGAGACATCAGGGACATGGAGATCATGATGGCTGAGGACACTGTAATGAGCGACGATTTATGCTGA
AA sequence Show only first row Show all	>Lus10037010 pacid=23171059 polypeptide=Lus10037010 locus=Lus10037010.g ID=Lus10037010.BGIv1.0 annot-version=v1.0 MFGTPSSTPAFGTPSSTPAFGTPSSTPAFGTPSSTPAFGTQGFGTPGSNSLFGAPSSTPAFGTPSTSAFGTGFGSSLFSTPFSAQQPQQQQQQQASPFQQ TGGGFGFQNQFSAQQQQQPTPFPNAQLTTQMAPVAPLPYSLSDRDIQTIVDAYNYKEDAGNPKYAFKHLLFSITDPQIRIKPADVSDIMWAEAMGKLEGM ESRDRERLWPQLVQGFKHLSDRLKLQDDVIASDAERLQTTQSNVKMLQRHIQAETLPWIDRLRQKEQSLQRRLLRTMRILEALESKGCRLPLTKGEVELA EKLASVVRQLKGPGAELGRRVQSLLTISRTQENGFNGGALMYLPGSTKIDERSLVDMQEVLQQQTEAIARLGSVLKRDIRDMEIMMAEDTVMSDDLC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G24310			unknown protein		Lus10037010 [exp]	0	1
AT3G04680		CLPS3	CLP-similar protein 3 (.1.2)		Lus10015355 [exp]	8.1	0.7996
AT3G02330			Pentatricopeptide repeat (PPR)...		Lus10014594 [exp]	79.0	0.7622
AT5G19580			glyoxal oxidase-related protei...		Lus10011109 [exp]	209.8	0.7279

Compare expression of checked genes

Lus10037010 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.