Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09900 351 / 6e-114 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G04760 243 / 8e-73 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G62670 188 / 4e-52 RPF2 rna processing factor 2 (.1) AT1G63130 186 / 2e-51 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62930 186 / 2e-51 RPF3 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G12300 183 / 3e-50 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G63330 179 / 2e-49 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62590 180 / 3e-49 pentatricopeptide (PPR) repeat-containing protein (.1) AT4G20090 179 / 7e-49 EMB1025 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63400 174 / 2e-47 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015109 [exp] 627 / 0 AT1G09900 351 / 6e-114 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10037013 [exp] 494 / 1e-174 AT1G09900 226 / 5e-70 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10015108 [exp] 497 / 8e-171 AT1G09900 345 / 2e-111 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10015113 [exp] 453 / 3e-154 AT1G09900 364 / 5e-119 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10031564 [exp] 451 / 3e-153 AT1G09900 358 / 6e-117 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10031566 [exp] 428 / 2e-144 AT1G09900 349 / 3e-113 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10015111 [exp] 418 / 1e-140 AT1G09900 343 / 2e-111 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10015110 [exp] 417 / 6e-140 AT1G09900 347 / 1e-112 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10015112 [exp] 414 / 5e-139 AT1G09900 327 / 6e-105 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G109500 [exp] 369 / 7e-121 AT1G09900 855 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.013G047000 [exp] 215 / 3e-62 AT3G04760 781 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.019G019300 [exp] 214 / 4e-62 AT3G04760 776 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.011G144300 [exp] 207 / 2e-59 AT1G79080 742 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G457300 [exp] 186 / 8e-52 AT1G79080 712 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G034200 [exp] 185 / 3e-51 AT1G12700 511 / 6e-174 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.013G032600 [exp] 181 / 1e-49 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G046200 [exp] 179 / 7e-49 AT1G12700 501 / 5e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G038400 [exp] 177 / 3e-48 AT1G12700 478 / 7e-161 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.019G019200 [exp] 174 / 4e-47 AT1G08610 578 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10037012 pacid=23171289 polypeptide=Lus10037012 locus=Lus10037012.g ID=Lus10037012.BGIv1.0 annot-version=v1.0 ATGGATTTCCTAGTGCTTCAAGATCTGAGTACCGTCAGATATGGCGGTTTCGCTAGAGGTAAGGCGCCGAAGATGAAGAAGAAGAAGATTGGTAAAGTTT GTTGTTGGAGCCTGAGGTGTTCTTCTTCTTCTTCTCTATCCTTGACAAATCGTCAGGTTTCTTCAAAAAATGGCCATATCTCTTCTTCGACTCAGGTCAC CGATTCCTACTCTTCAGATTTCAAAAACCGTCTTTGGGAGCTGATTTCAAAGGAGCAATTGGAGGAAGGATTCACGTACCTTAAGAACATTGTCGTCTCC TCACAAGGGGAAGCCCTAAACTTAGGTGCATGCAGAGGCCTAATTGAAGCGCTGTGTCGTACTGGAAGAAGTAGAATGGCAGCTCAAGTAGTTGAGCTAT TAGAGTGTTATGAAACAACAGCAACCCTTGATACTCGTACTTACTCTAAATTCCTTCAAGGGCTTTGTAAGGCAGGGGAGGTTGACAGTGCCTTGAAGCT TTTGGACAGATTGCATTCTTCGGGGCGTTGTAAGCCCGATGTCTATATGTACAACACTCTGATCATTGCTATGTTTCGAAAAGGCAGGTTCCGGCAAGTG ATGAAGCTCTTGGATGATATGAGGAGCAAAGGATGCAAAGCTTATAACTATACTTGTTACACTGTGGTCAACGGGATGTGTAGGCAAGGGAGATTGGATG AAGCTTTTAGGTTTGTAACCTCCTCCAGGTATTCTTCTTACGGCTGGACGCCTTCTGTCGAATCCTACAATGTTGTGTTGAATTGCCTGTGTCATACCGG AAGGTTGAATGATGCTTCGAAACTGTTAGCTCTGATGGACGATCGCGAAGGCTGTTCTCCTTCTGCTGCTACTTTCATGATCTTGATTAGAACCCTGTGT AGAAAAGGTTTGTTGTTTGGAGCCATCTCGTTGTTGGAGAGCATGCTGCAGTATGGATGTACTCCGAATCTTTATCACTATAACCGCGTCTTCCATGGCT TGTTGTGCAAGCAGAACGGTATGGGATTGGGAGTGGCGATTGAGTTTATCGAGTTAATGATATCCCAAGGCTGTTATCCGACAGTTGTCATCTTCAATAC TTTGTTGGCTGCGTTGTGGGAGCACGGTAAGGTTGATGCGGCGTTCGAGTTGTATAACGAGTTGATCGCCAGCAGAATCTGTCCGGCTAATCTGGCTACT TACAATATAGTAATCCAGGGGCTTTCGAGTTTGGGGAGAGTGGATGAAGCTCTCCGAGTTTTGGAGGAGGTGCGTGGTATGGAAGGTTTCAAACCAGGTG AGATTGTCTATCCCAAGCTGGTCGTCGCGCTTATTGGAGAAGGCAAGACCAATGAGGCAATGGAGTTTTTCGATGAACTGAAGAGGTCGGAGGTGTCTGT GCCGGCTAAATGCTACAACTGGATCATCAAGGCGCTCTGCGGTGTTGGAGAGATTGACCTTGCGATCGACGTGGTGGTGTACATGGTTTCCAAGGGTCGT TCTCGGATTAAATTTAAGCCCAGTCATACTACATTTGAAGCGGTGATTGAAGGATTGGCAAGGGCTGGATTATGTACAGAGAGCATGGAGTTGCTTAAAG AGCTCATCGTAATAGGAGCTATGAACAGAGGTATGAGCATTGGTTTAGCAGAGAGGTTACAAGAGATTTGCAGGTTGGAGTGA
AA sequence Show only first row Show all	>Lus10037012 pacid=23171289 polypeptide=Lus10037012 locus=Lus10037012.g ID=Lus10037012.BGIv1.0 annot-version=v1.0 MDFLVLQDLSTVRYGGFARGKAPKMKKKKIGKVCCWSLRCSSSSSLSLTNRQVSSKNGHISSSTQVTDSYSSDFKNRLWELISKEQLEEGFTYLKNIVVS SQGEALNLGACRGLIEALCRTGRSRMAAQVVELLECYETTATLDTRTYSKFLQGLCKAGEVDSALKLLDRLHSSGRCKPDVYMYNTLIIAMFRKGRFRQV MKLLDDMRSKGCKAYNYTCYTVVNGMCRQGRLDEAFRFVTSSRYSSYGWTPSVESYNVVLNCLCHTGRLNDASKLLALMDDREGCSPSAATFMILIRTLC RKGLLFGAISLLESMLQYGCTPNLYHYNRVFHGLLCKQNGMGLGVAIEFIELMISQGCYPTVVIFNTLLAALWEHGKVDAAFELYNELIASRICPANLAT YNIVIQGLSSLGRVDEALRVLEEVRGMEGFKPGEIVYPKLVVALIGEGKTNEAMEFFDELKRSEVSVPAKCYNWIIKALCGVGEIDLAIDVVVYMVSKGR SRIKFKPSHTTFEAVIEGLARAGLCTESMELLKELIVIGAMNRGMSIGLAERLQEICRLE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09900			Pentatricopeptide repeat (PPR-...		Lus10037012 [exp]	0	1
AT5G46580			pentatricopeptide (PPR) repeat...		Lus10000897 [exp]	1.0	0.9636
AT3G62030		CYP20-3, ROC4	cyclophilin 20-3, rotamase CYP...		Lus10009255 [exp]	3.2	0.9382
AT4G25080		CHLM	magnesium-protoporphyrin IX me...		Lus10016728 [exp]	4.6	0.9418
AT5G45930		CHLI-2, CHLI2	magnesium chelatase i2 (.1)		Lus10025423 [exp]	5.3	0.9441
AT2G37660			NAD(P)-binding Rossmann-fold s...		Lus10010846 [exp]	7.5	0.9219
AT1G26761			Arabinanase/levansucrase/inver...		Lus10036775 [exp]	9.2	0.9226
AT4G01037		AtWTF1	what's this factor?, Ubiquitin...		Lus10029446 [exp]	10.7	0.9137
AT1G22700			Tetratricopeptide repeat (TPR)...		Lus10021972 [exp]	12.0	0.9255
AT2G33800		EMB3113	EMBRYO DEFECTIVE 3113, Ribosom...		Lus10025445 [exp]	12.5	0.9301
AT2G31890		ATRAP	RAP (.1)		Lus10033769 [exp]	12.6	0.9135

Compare expression of checked genes

Lus10037012 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.