Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09900 226 / 8e-70 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G04760 153 / 1e-42 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G53700 122 / 4e-31 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G09820 120 / 1e-30 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT4G20090 119 / 2e-30 EMB1025 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G64580 119 / 3e-30 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62930 119 / 4e-30 RPF3 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G12775 117 / 1e-29 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G06710 117 / 2e-29 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G46100 115 / 2e-29 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037012 [exp] 495 / 4e-175 AT1G09900 353 / 5e-115 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10015109 [exp] 365 / 7e-124 AT1G09900 351 / 6e-114 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10015108 [exp] 301 / 6e-99 AT1G09900 345 / 2e-111 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10031565 [exp] 285 / 3e-91 AT1G09900 335 / 4e-106 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10015112 [exp] 274 / 6e-89 AT1G09900 327 / 6e-105 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10031566 [exp] 260 / 2e-83 AT1G09900 349 / 3e-113 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10015113 [exp] 256 / 7e-82 AT1G09900 364 / 5e-119 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10015111 [exp] 255 / 2e-81 AT1G09900 343 / 2e-111 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10015110 [exp] 255 / 2e-81 AT1G09900 347 / 1e-112 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G109500 [exp] 236 / 1e-73 AT1G09900 855 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.019G019300 [exp] 145 / 1e-39 AT3G04760 776 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.013G047000 [exp] 142 / 1e-38 AT3G04760 781 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.005G046000 [exp] 129 / 1e-33 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.019G019200 [exp] 123 / 9e-32 AT1G08610 578 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G038300 [exp] 120 / 1e-30 AT1G12700 490 / 8e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.003G154800 [exp] 120 / 1e-30 AT4G20090 816 / 0.0 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.011G144300 [exp] 119 / 3e-30 AT1G79080 742 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G050240 [exp] 117 / 1e-29 AT1G12700 465 / 1e-155 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.006G015900 [exp] 116 / 4e-29 AT5G64320 878 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10037013 pacid=23170986 polypeptide=Lus10037013 locus=Lus10037013.g ID=Lus10037013.BGIv1.0 annot-version=v1.0 ATGGACGATCGTAGAGGTTGTTCGCCATCTGCGGTTACTTTCACGATCTTGCTTAAAACCCTGTGTAAAAATGGTTTGTTGTTTCGAGCCATCTCCTTGT TGGAGAGTATGCCGCAGTATGGATGTACTCCGAATCTTTATCACTATAACCGCGTCTTCCATGGCTTGTTGAACAGTATGGGATTGGGAGTGGCGATTGA GTTTATCGAGTTAATGATATCCCGAGGCTGTTATCCAACAATTGTCATCTTTAATACTTTGTTGGCTGCATTGTGGGAGCACAGCGAGGTTGATGCTGCG TTCGAGTTGTATAACGAGTTGATCGCCAGCAGGATCTGTCCAGCTAACCTGGCTACTTACAATATAGTAATCTATGGGCTTTCGAGTTGGGGGAGAGTGG ATGAAGCTCTTCGAGTTTTGGACAAGGTGCGTGGTATGGAAGGTTTAAAACCGGGTGATATTGCCTATCCCAAACTGGTCGTCGCGCTTATTGGAGAAGG CAAGATCGATGAAGCAATGGAGTTTTTCGATGAACTGAAGAGGCCGGAGGTGTCTGTGCCGGCTAAATGCTACAACTGGATTATCAAGGCGCTCTGCGGT GTTGGAGAGATTGACCGTGCGATCGATGTGATGGTGTACATGGTTTCCAACGGTCGTTCTCGTATTAAATTTAAGCCTAGTCATACTACATTTGAAGCGG TGATTGAAGGGTTGGCAAGGGTTGGATTATATTGTGAGAGTGTGGAGTTGCTTAACGAGCTCCTCGTAAGAGGAGCTATGAACAGAGATATGAGCATTGG TTTAGCAGAGAGGTTGCAAGAGATTTGTAGGTTGGAGTAA
AA sequence Show only first row Show all	>Lus10037013 pacid=23170986 polypeptide=Lus10037013 locus=Lus10037013.g ID=Lus10037013.BGIv1.0 annot-version=v1.0 MDDRRGCSPSAVTFTILLKTLCKNGLLFRAISLLESMPQYGCTPNLYHYNRVFHGLLNSMGLGVAIEFIELMISRGCYPTIVIFNTLLAALWEHSEVDAA FELYNELIASRICPANLATYNIVIYGLSSWGRVDEALRVLDKVRGMEGLKPGDIAYPKLVVALIGEGKIDEAMEFFDELKRPEVSVPAKCYNWIIKALCG VGEIDRAIDVMVYMVSNGRSRIKFKPSHTTFEAVIEGLARVGLYCESVELLNELLVRGAMNRDMSIGLAERLQEICRLE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09900			Pentatricopeptide repeat (PPR-...		Lus10037013 [exp]	0	1
AT1G20340		PETE2, DRT112	PLASTOCYANIN 2, DNA-DAMAGE-REP...		Lus10021839 [exp]	2.4	0.8963
AT3G20680			Domain of unknown function (DU...		Lus10006345 [exp]	4.0	0.8887
AT3G27230			S-adenosyl-L-methionine-depend...		Lus10024319 [exp]	4.1	0.8587
AT1G15820		CP24, LHCB6	light harvesting complex photo...		Lus10020418 [exp]	4.2	0.9117
AT4G37200		HCF164	HIGH CHLOROPHYLL FLUORESCENCE ...		Lus10016780 [exp]	7.9	0.8784
AT5G01650			Tautomerase/MIF superfamily pr...		Lus10022681 [exp]	8.1	0.8526
AT1G20340		PETE2, DRT112	PLASTOCYANIN 2, DNA-DAMAGE-REP...		Lus10034554 [exp]	9.6	0.8904
AT2G30570		PSBW	photosystem II reaction center...		Lus10018771 [exp]	10.2	0.8855
AT2G37920		EMB1513	embryo defective 1513, copper ...		Lus10002043 [exp]	13.7	0.8698
AT3G25580			Thioredoxin superfamily protei...		Lus10026602 [exp]	14.8	0.8078

Compare expression of checked genes

Lus10037013 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.