Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67420 1078 / 0 Zn-dependent exopeptidases superfamily protein (.1.2) AT1G67430 266 / 8e-83 Ribosomal protein L22p/L17e family protein (.1.2) AT1G27400 264 / 3e-82 Ribosomal protein L22p/L17e family protein (.1) AT5G20660 180 / 4e-46 Zn-dependent exopeptidases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015792 [exp] 1131 / 0 AT1G67420 511 / 2e-168 Zn-dependent exopeptidases superfamily protein (.1.2) Lus10006421 [exp] 316 / 2e-101 AT1G67430 315 / 1e-111 Ribosomal protein L22p/L17e family protein (.1.2) Lus10009230 [exp] 187 / 2e-48 AT5G20660 1154 / 0.0 Zn-dependent exopeptidases superfamily protein (.1.2) Lus10037997 [exp] 186 / 5e-48 AT5G20660 1157 / 0.0 Zn-dependent exopeptidases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G175400 [exp] 1199 / 0 AT1G67420 1062 / 0.0 Zn-dependent exopeptidases superfamily protein (.1.2) Potri.010G060500 [exp] 1179 / 0 AT1G67420 1085 / 0.0 Zn-dependent exopeptidases superfamily protein (.1.2) Potri.015G094400 [exp] 276 / 9e-87 AT1G67430 324 / 4e-115 Ribosomal protein L22p/L17e family protein (.1.2) Potri.012G096600 [exp] 276 / 1e-86 AT1G27400 321 / 4e-114 Ribosomal protein L22p/L17e family protein (.1) Potri.010G060400 [exp] 267 / 2e-83 AT1G67430 299 / 3e-105 Ribosomal protein L22p/L17e family protein (.1.2) Potri.008G175500 [exp] 263 / 7e-82 AT1G67430 285 / 1e-99 Ribosomal protein L22p/L17e family protein (.1.2) Potri.008G039400 [exp] 183 / 2e-47 AT5G20660 1083 / 0.0 Zn-dependent exopeptidases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00237 [flax] [poplar] Ribosomal_L22 Ribosomal protein L22p/L17e CL0035 [flax] [poplar] Peptidase_MH PF04389 [flax] [poplar] Peptidase_M28 Peptidase family M28
Representative CDS sequence Show only first row Show all	>Lus10037015 pacid=23171276 polypeptide=Lus10037015 locus=Lus10037015.g ID=Lus10037015.BGIv1.0 annot-version=v1.0 ATGGCGTTCAGGCTCAGTCCAGGCGATGCTACGGGATTCAAGCTGCTTTTCTTCCTCGCGGCACTGTACGGACTAATGTCCGTGCTAGTGTACGCTGTAC TTTACATGAAGTTCATTACGCCGCTCGACGTTGACGCTCCTCTCGATCGTTTCTCCCAGGCCAGAGCCGTGGAGCACGTACGAGTGCTGACCAGGACTGA ACGCCAGGAAGGGCGTCCTGGTTTGAGAGAAGCTGCAAAATACATTAGAAATGAGTTGGAAGAGATAAAAGGAAGAGCTGGATCAAGTTACCGAATTGAG ATTGAAGAGACTGCAGTCAACGGTTCCTTCAATATGTTATTCTTAGGCCACAGCATATCTTTAGGATACAGAAATCACACCAACATCATTATGAGAATAT CATCAGTGGACTCACTGGCCAATGACGCTTCCGTTCTAGTAAATGGCCATTTTGATAGTCCACTTGGCTCGCCTGGAGCCGGTGATTGTGGTTCTTGCGT TGCATCAATGCTGGAAGTTGCAAGAGTTATTGTCGACTCTGGCTGGATCCCTCCTCGTCCTGTTGTATTTCTTTTCAATGGAGCAGAAGAACTTTTCATG TTGGCTGCACATGGTTTCATGACAACACACGAATGGAGACATTCAATTGGAGCTGCTATAAATGTTGAAGCATCTGGGACAGGAGGCCCTGATTTAGTAT GCCAATCTGGACATGGTTCGTGGCCTTCTCAAGTATATGCGCAGTCTGCAGTATATCCCATGGCACACAGTGCAGCTCAGGATGTCTTTCCTGTTATTCC TGGCGATACAGACTACAGAATGTTTTCCCAGGATTATGGGAACATTCCCAGCCTTGACATCATCTTTCTTCTTGGCGGATATTACTATCATACCTCCTTT GATACGGTGGACAAACTACTACCTGGATCCGTGCAAGCACGTGGAGACAACTTAGTGAGTATACTTAAAGGATTTGCAAATTCTTCCAATCTGCGTAGTT CACAAGAACGGGAATCCCCTGAAGCAGTTGTGAATGATTACAATGACGAACGTGCTATTTTCTTCGATTATTTAACATGGTTCTTGGTATTCTATTCAAG AAGAGTAGCGAAAGTACTGCACAGTGGTCCAATAGTTCTCTTTCTAGCCATGCCTTTGGTTTTGTCTTTTCTCGATTCTGGGCGCCGTTCTTGGTTTGCA ACCTTCTGCGACTTTATTAAAGGAATGCTGTTGCATGCAAGTGGATTCATACTGGGCACTCTTTTTCCAATTGCATTTGCCATTGGAAAATTGTTTTTCT CTGCGCATGCCATGAACTGGTTTTCTCATCCATACTTGGCGCTCATGACGTTTATTCCGTGTTCACTTCTCGGTTTGCTGATGCCAAGAGCTATATGGAG CTCTTTCCCTCTGTCCCAGGTTGCTTCCAACCTTAGCAAATCCAAGGAGGCATTGTCTAATGAAGCTAGGTTTTGGGGAGCACTTGGATTTTATTCTCTC ATAACTCTGGCTTATCTTGCAGCTGGGCTCGGCGGTGGGTTTTTGACGTTTTACATTTCAGCTTCTATGCTTCTAGCTTGGATAATCTTTTGCCTTTCTA CCAAGTTTTATGGCTGTCAAACACTTCGGCCAACAATCTCTTATATAATAACTATGGTTCCTTGCATCACGTATGGCGTGTATTTCGGTGGATTCCTCAT CCAATTCTTTATTGAAAAGACGGGCATGATGGGTGCTATTCCACCACCTTTCGGATATTATGTGCCCGATGTTTTTGTGGCATCAGTTGTCGGAATGGTA ACTAGTTGGTGTGTTGGCCCTTTAATACCCGTCTGTGGTCAGTGGTTAGCTAGATCATCCATCCTCCGGTTCCTGTTGCAAATGAGCGTGATTGCCTTCG CCATCTCCTCACAGTTCTTTCCGTACAGCAACACCGCTCCTAAAAGACTTATTCTCGAACACACAATTGTCACTGCTGATGGAAGTAACATTCTGGATGC AACTTACGATCTAGCTATAGTGGACTCAAATTCCTTGCACTTTCTCTTCAAGCATTCCCCCGAAGCTGCTAAGCGATTGCAAATCGGTTCCGACTTCTCC TTCGAAACTGCCAATAAGTCTCACCATAACGTCTGGGTGTCACTTTACCCAGTATCACACATGTTCTCTGGAACCCTGAAGTTTCCGGCAAGAAGCGACG AGATCCTGGCAAAATACCAACAGTTCCCTCATTTGTATAACACCAATCCTGACACTTTCTCCAGTGACGGATCTCGAAGAGTTCACTTGGAGCTTTCCTT GGGCGACATGAAAGAGGTATGGGTCACAGTGCTAAACATCACAGGCCCCTTATCAAGCTGGTCCTTCGCCAACACCGAACTTCCAGCTCCAGAATCCATC CACGGAGGCCCTCCATCGTTCATTTTGAGACTCAGCGGATCAAGCCATGAAACCTGGACGTTCTGGTTGGAGGCGGCTAGCAGTTCGGAGGAGAAGTTGA GGGTAGTTGTGGCTGTGATAGACCAAGCAATGGTGCGCGAAACGGAGAAGTTAAAGGGACTTTTCCCTGACTGGGTCGATGTCACTGCTTATACTGCTTG CAAAGCTAGGGGCTCTGATCTCAGAGTTCATTTCAAGAACACAAGGGAGACAGCGTTCTCCATCAGGAAGATGACTTTGGTGCGTGCCAAGAGTTATCTT GAAGATGTCATAGCCCACAAGCAGGCTATTCCCTTCAGGAGGTTCTGTCGTGGTGTTGGCAGAACCGCACAGGCAAAGAATGCTGGTCACCCGAATGGAC AGGCTCGTTGGCCTGCAAAGTCTGCTAAGTTCGTCCTTGATTTATTGAAAAATGCTGAGAGTAACGCTGAGGTGAAAGGGTTGGACGTCGATGCTCTCCA CATTTCCCACGTCCAGGTTAACCAGGCTCGGAAGCAAAGGCGTCGTACTTACCGTGCACATGGACGAATCAACCCTTACATGTCGAATCCTTGCCACATC GAGCTGATCCTTTCCGAGAAAGAGGAGCCTGTCAAGAAAGAGCCGGAGTCTCAACTGGCTACTAGCGGCAGGTCGAGGAAGAACCAAGCTTTGCGAAGTG GTGCATCCTCTTAG
AA sequence Show only first row Show all	>Lus10037015 pacid=23171276 polypeptide=Lus10037015 locus=Lus10037015.g ID=Lus10037015.BGIv1.0 annot-version=v1.0 MAFRLSPGDATGFKLLFFLAALYGLMSVLVYAVLYMKFITPLDVDAPLDRFSQARAVEHVRVLTRTERQEGRPGLREAAKYIRNELEEIKGRAGSSYRIE IEETAVNGSFNMLFLGHSISLGYRNHTNIIMRISSVDSLANDASVLVNGHFDSPLGSPGAGDCGSCVASMLEVARVIVDSGWIPPRPVVFLFNGAEELFM LAAHGFMTTHEWRHSIGAAINVEASGTGGPDLVCQSGHGSWPSQVYAQSAVYPMAHSAAQDVFPVIPGDTDYRMFSQDYGNIPSLDIIFLLGGYYYHTSF DTVDKLLPGSVQARGDNLVSILKGFANSSNLRSSQERESPEAVVNDYNDERAIFFDYLTWFLVFYSRRVAKVLHSGPIVLFLAMPLVLSFLDSGRRSWFA TFCDFIKGMLLHASGFILGTLFPIAFAIGKLFFSAHAMNWFSHPYLALMTFIPCSLLGLLMPRAIWSSFPLSQVASNLSKSKEALSNEARFWGALGFYSL ITLAYLAAGLGGGFLTFYISASMLLAWIIFCLSTKFYGCQTLRPTISYIITMVPCITYGVYFGGFLIQFFIEKTGMMGAIPPPFGYYVPDVFVASVVGMV TSWCVGPLIPVCGQWLARSSILRFLLQMSVIAFAISSQFFPYSNTAPKRLILEHTIVTADGSNILDATYDLAIVDSNSLHFLFKHSPEAAKRLQIGSDFS FETANKSHHNVWVSLYPVSHMFSGTLKFPARSDEILAKYQQFPHLYNTNPDTFSSDGSRRVHLELSLGDMKEVWVTVLNITGPLSSWSFANTELPAPESI HGGPPSFILRLSGSSHETWTFWLEAASSSEEKLRVVVAVIDQAMVRETEKLKGLFPDWVDVTAYTACKARGSDLRVHFKNTRETAFSIRKMTLVRAKSYL EDVIAHKQAIPFRRFCRGVGRTAQAKNAGHPNGQARWPAKSAKFVLDLLKNAESNAEVKGLDVDALHISHVQVNQARKQRRRTYRAHGRINPYMSNPCHI ELILSEKEEPVKKEPESQLATSGRSRKNQALRSGASS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G67420			Zn-dependent exopeptidases sup...		Lus10037015 [exp]	0	1
AT5G18540			unknown protein		Lus10033960 [exp]	4.8	0.8426
AT2G18850			SET domain-containing protein ...		Lus10006953 [exp]	7.7	0.8834
AT5G14240			Thioredoxin superfamily protei...		Lus10014596 [exp]	10.5	0.8354
AT3G06790			plastid developmental protein ...		Lus10016825 [exp]	16.2	0.8739
AT5G39710		EMB2745	EMBRYO DEFECTIVE 2745, Tetratr...		Lus10012068 [exp]	18.9	0.8484
AT4G37280			MRG family protein (.1)		Lus10019312 [exp]	19.9	0.8116
AT2G38300	GARP		myb-like HTH transcriptional r...		Lus10002207 [exp]	21.5	0.8664
AT5G13960		SDG33, KYP, SUV...	SET DOMAIN PROTEIN 33, KRYPTON...		Lus10002571 [exp]	22.5	0.8646
AT3G56930			DHHC-type zinc finger family p...		Lus10010447 [exp]	23.1	0.8155
AT3G07570			Cytochrome b561/ferric reducta...		Lus10016080 [exp]	24.2	0.8652

Compare expression of checked genes

Lus10037015 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.