Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67410 571 / 0 Exostosin family protein (.1) AT3G45400 308 / 2e-100 exostosin family protein (.1) AT1G74680 305 / 2e-99 Exostosin family protein (.1) AT3G03650 298 / 3e-96 EDA5 embryo sac development arrest 5, Exostosin family protein (.1) AT2G35100 269 / 1e-85 ARAD1 ARABINAN DEFICIENT 1, Exostosin family protein (.1) AT5G44930 250 / 2e-78 ARAD2 ARABINAN DEFICIENT 2, Exostosin family protein (.1.2) AT5G16890 228 / 5e-69 Exostosin family protein (.1) AT1G34270 221 / 9e-67 Exostosin family protein (.1) AT4G38040 100 / 1e-22 Exostosin family protein (.1) AT3G07620 92 / 8e-20 Exostosin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015791 [exp] 865 / 0 AT1G67410 595 / 0.0 Exostosin family protein (.1) Lus10002060 [exp] 317 / 1e-103 AT1G74680 537 / 0.0 Exostosin family protein (.1) Lus10003870 [exp] 310 / 7e-101 AT3G45400 644 / 0.0 exostosin family protein (.1) Lus10020308 [exp] 296 / 4e-95 AT3G45400 622 / 0.0 exostosin family protein (.1) Lus10005684 [exp] 297 / 1e-94 AT3G45400 619 / 0.0 exostosin family protein (.1) Lus10024214 [exp] 288 / 5e-93 AT1G74680 468 / 3e-163 Exostosin family protein (.1) Lus10013627 [exp] 278 / 2e-90 AT3G45400 524 / 0.0 exostosin family protein (.1) Lus10038355 [exp] 270 / 4e-86 AT2G35100 605 / 0.0 ARABINAN DEFICIENT 1, Exostosin family protein (.1) Lus10036219 [exp] 270 / 3e-84 AT2G35100 611 / 0.0 ARABINAN DEFICIENT 1, Exostosin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G034500 [exp] 619 / 0 AT1G67410 557 / 0.0 Exostosin family protein (.1) Potri.019G044600 [exp] 310 / 1e-100 AT3G45400 607 / 0.0 exostosin family protein (.1) Potri.002G210000 [exp] 309 / 1e-100 AT1G74680 565 / 0.0 Exostosin family protein (.1) Potri.013G067400 [exp] 308 / 6e-100 AT3G45400 587 / 0.0 exostosin family protein (.1) Potri.012G124600 [exp] 271 / 7e-86 AT2G35100 604 / 0.0 ARABINAN DEFICIENT 1, Exostosin family protein (.1) Potri.015G124800 [exp] 265 / 2e-83 AT2G35100 581 / 0.0 ARABINAN DEFICIENT 1, Exostosin family protein (.1) Potri.013G116200 [exp] 243 / 3e-75 AT1G34270 660 / 0.0 Exostosin family protein (.1) Potri.019G086800 [exp] 241 / 2e-74 AT1G34270 655 / 0.0 Exostosin family protein (.1) Potri.019G049800 [exp] 232 / 2e-70 AT5G16890 693 / 0.0 Exostosin family protein (.1) Potri.005G055000 [exp] 99 / 3e-25 AT3G45400 145 / 5e-43 exostosin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03016 [flax] [poplar] Exostosin Exostosin family
Representative CDS sequence Show only first row Show all	>Lus10037016 pacid=23171005 polypeptide=Lus10037016 locus=Lus10037016.g ID=Lus10037016.BGIv1.0 annot-version=v1.0 ATGGAGGAGATCGGCAGAACTCGATCCCACAAGATGTATGGGAAAGTCATAATCTCAGTAATTTTCTTCCTCCTCCTCGCTTTCCTCTACTCAATCTTCA TCGGATCTCTCGACTTCCGCCCATACTTCTTCCCGCGCCTACCGCAGCTGCAGCAGCAGCATTCGCCGGAGGCGTCTCCACCGGCGGACGCTTCTTCTTG CGAGTACAAGCCGCTGAATGTCTACATGTACGATCTTCCGCGGAAGTTCCACGTGGGGATGATGGATCCGGCAGCTGGCCAGGAGAACGAGCCGGTGACC GTCGAAAACATACCGCGGTGGCAGAAGAACGCCGGGGTGAGGAAGCAGCACAGTGTGGAGTACTGGCTGATGGTTTCGCTTCTGTCCGATGGTGACGGAG GAGGAGGGAGGGAGGCGGTTAGGGTTTTGGATCCGGAGAAGGCGGATGCGTTCTATGTCCCTTTTTTCTCGTCTCTGAGCTTCAATACTCACGGGCATAA CATGACGGATCCGGAGACGGAGGCTGATCGGCAATTGCAGGTTGAAATAATCGACATGTTGTACAAATCCAAGTATTGGCAAAGATCTGGAGGCAGAGAC CATGTCATTCCCATGACACATCCCAACGCTTTCAGGTTTCTACGACAAGAGCTGAATGCATCCATTCTCATCGTAGTAGATTTCGGGCGCTATCCGAGAT CTATGTCAACCCTGCATAAAGATGTCGTGGCTCCTTATGTGCATGTTGTGGATACTTTCACAAATGACGATGTTAAGGATCCATACGAATCGAGGAAAAC ACTTATTTTCTTCCGTGGGAGTACAGTCAGAAAAGATGAAGGTAAAGTACGTGCTAAATTGGAGAAGATATTAGCTGGTCAGGAAAATGTTCGGTATGAG CAGGGTAGGCCTACTACTCATTCAATACAAGAGTCAACAGAAGGAATGCGGTCATCGAAATTCTGTCTGCATCCAGCAGGAGACACGCCTTCATCATGCA GGCTATTCGACGCGATTGTCAGCCACTGTGTTCCCGTGGTTGTGAGCGATAAAATCGAGCTCCCTTATGAGGACGAAATCGACTACACCAAATTCGCCCT CTTCTTCTCGGACAGCAAAGCACTGAAGCCCGGATACTTAGTCGACAAGCTCCGTAACTTCCCAAAGAAGAGATGGCTGGAAATGTGGAGAAACCTAAAG AACATATCCCGTCACTTCGAGTTCGAGTTCCCGCCAACTAAAGGAGATGCGACAGACATGCTGTGGAGACAGATTAGGCGGAAGCTTCCAGAGGCCCAGC TTGCTGTACATAGAAGCCATAGATTGACTGTTCCAGATTGGTGGCGACGAAGACGATGA
AA sequence Show only first row Show all	>Lus10037016 pacid=23171005 polypeptide=Lus10037016 locus=Lus10037016.g ID=Lus10037016.BGIv1.0 annot-version=v1.0 MEEIGRTRSHKMYGKVIISVIFFLLLAFLYSIFIGSLDFRPYFFPRLPQLQQQHSPEASPPADASSCEYKPLNVYMYDLPRKFHVGMMDPAAGQENEPVT VENIPRWQKNAGVRKQHSVEYWLMVSLLSDGDGGGGREAVRVLDPEKADAFYVPFFSSLSFNTHGHNMTDPETEADRQLQVEIIDMLYKSKYWQRSGGRD HVIPMTHPNAFRFLRQELNASILIVVDFGRYPRSMSTLHKDVVAPYVHVVDTFTNDDVKDPYESRKTLIFFRGSTVRKDEGKVRAKLEKILAGQENVRYE QGRPTTHSIQESTEGMRSSKFCLHPAGDTPSSCRLFDAIVSHCVPVVVSDKIELPYEDEIDYTKFALFFSDSKALKPGYLVDKLRNFPKKRWLEMWRNLK NISRHFEFEFPPTKGDATDMLWRQIRRKLPEAQLAVHRSHRLTVPDWWRRRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G67410			Exostosin family protein (.1)		Lus10037016 [exp]	0	1
AT5G61240			Leucine-rich repeat (LRR) fami...		Lus10004662 [exp]	1.7	0.8361
AT3G26020			Protein phosphatase 2A regulat...		Lus10011381 [exp]	6.9	0.8010
					Lus10024121 [exp]	14.4	0.8406
AT3G20300			Protein of unknown function (D...		Lus10009722 [exp]	28.5	0.8179
AT1G13580		LOH3, LAG13	LAG One Homologue 3, LAG1 long...		Lus10013063 [exp]	30.5	0.8175
AT5G45580	GARP		Homeodomain-like superfamily p...		Lus10012142 [exp]	36.3	0.8237
AT1G52340		SIS4, SDR1, ISI...	SHORT-CHAIN DEHYDROGENASE REDU...		Lus10016354 [exp]	39.8	0.7651
AT4G30190		PMA2, AHA2	PLASMA MEMBRANE PROTON ATPASE ...		Lus10001631 [exp]	43.4	0.7898
AT1G19230			Riboflavin synthase-like super...		Lus10034890 [exp]	47.6	0.7992
					Lus10017937 [exp]	49.1	0.7905

Compare expression of checked genes

Lus10037016 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.