Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67400 363 / 2e-127 ELMO/CED-12 family protein (.1) AT2G44770 303 / 9e-104 ELMO/CED-12 family protein (.1) AT3G60260 294 / 2e-100 ELMO/CED-12 family protein (.1.2.3.4) AT3G03610 262 / 7e-87 ELMO/CED-12 family protein (.1) AT1G03620 259 / 1e-86 ELMO/CED-12 family protein (.1) AT3G43400 222 / 7e-73 ELMO/CED-12 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015790 [exp] 495 / 8e-180 AT1G67400 385 / 4e-136 ELMO/CED-12 family protein (.1) Lus10024285 [exp] 313 / 1e-107 AT2G44770 454 / 1e-163 ELMO/CED-12 family protein (.1) Lus10003841 [exp] 267 / 8e-88 AT2G44770 407 / 2e-142 ELMO/CED-12 family protein (.1) Lus10039805 [exp] 249 / 3e-83 AT1G03620 327 / 3e-114 ELMO/CED-12 family protein (.1) Lus10018574 [exp] 248 / 4e-82 AT1G03620 328 / 7e-114 ELMO/CED-12 family protein (.1) Lus10009523 [exp] 241 / 1e-78 AT3G03610 429 / 4e-152 ELMO/CED-12 family protein (.1) Lus10020344 [exp] 238 / 1e-77 AT3G03610 428 / 1e-151 ELMO/CED-12 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G175301 [exp] 399 / 1e-141 AT1G67400 422 / 6e-151 ELMO/CED-12 family protein (.1) Potri.010G060700 [exp] 395 / 4e-140 AT1G67400 419 / 1e-149 ELMO/CED-12 family protein (.1) Potri.014G049800 [exp] 298 / 4e-102 AT3G60260 434 / 1e-155 ELMO/CED-12 family protein (.1.2.3.4) Potri.002G138700 [exp] 298 / 5e-102 AT3G60260 459 / 8e-166 ELMO/CED-12 family protein (.1.2.3.4) Potri.013G069000 [exp] 234 / 4e-76 AT3G03610 441 / 6e-157 ELMO/CED-12 family protein (.1) Potri.013G136200 [exp] 227 / 4e-73 AT1G03620 322 / 1e-110 ELMO/CED-12 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04727 [flax] [poplar] ELMO_CED12 ELMO/CED-12 family
Representative CDS sequence Show only first row Show all	>Lus10037017 pacid=23171139 polypeptide=Lus10037017 locus=Lus10037017.g ID=Lus10037017.BGIv1.0 annot-version=v1.0 ATGGGCGTAGTTAGAGCTCAACAAGGCCACAGCTTCTCCTTCTGCACCACCATTTCCATCTCCTCCCGATGCTCCCAAGGCGCTCCTCCTGCTTCCAACT CTTCAGAGGAAACTGGAGCTTCTGGAGCTTGGATTGGTAAAGGGCTCACTTGTGTGTGCTTCAACAGGAAAGGAGTTTATCATCAGCGCATCTTCATCAA CATGACTCCTCACCAGGAGGAAAGACTGAGGAGGTTGAAGCATCGGATGAAGGTCAATTTCGATACCTCTAGGACCGATCACCAGGCAGCTCTAAGAGCA TTATGGTCAGCTACATATCCAGACAAACAGCTATGTGGACTGATATCTGATCAATGGAAGGAAATGGGGTGGCAGGGGAAAGATCCTTCTACTGATTTCA GGGGAGCTGGGTTTATTTCCTTGGAGAATCTGTTGTTCTTTTCCAAGACTTTCACGACGTCGTTTCAAGTGTTGCTGAAGAAGCAAGGAGGAAAGAGATC GGCCTGGGAGTATCCGTTTGCTGTTGCTGGCGTAAACATCACATTCATGATCATGCAGATGCTTGACCTTGAGGCTACTAAGCCTAGGACATTCGTCAGA TCAGTTTTCTTGCACATGTTATCAGAAGACGAGTGGGCGTTTGACTTGCTATATTGCGTTGCGTTTGTGATAATGGACAAGCAATGGCTAGAGAGGAATG CAACCTACATGGAGTTCAATGAGGTTTTGAAGTCAACCAGAACTCAGGTCGAGAGAGAGCTTCTAATGGACGATGTTCTCCGAATCGAGGACATGCCTTC GTATAGCCTTCTTTACTAG
AA sequence Show only first row Show all	>Lus10037017 pacid=23171139 polypeptide=Lus10037017 locus=Lus10037017.g ID=Lus10037017.BGIv1.0 annot-version=v1.0 MGVVRAQQGHSFSFCTTISISSRCSQGAPPASNSSEETGASGAWIGKGLTCVCFNRKGVYHQRIFINMTPHQEERLRRLKHRMKVNFDTSRTDHQAALRA LWSATYPDKQLCGLISDQWKEMGWQGKDPSTDFRGAGFISLENLLFFSKTFTTSFQVLLKKQGGKRSAWEYPFAVAGVNITFMIMQMLDLEATKPRTFVR SVFLHMLSEDEWAFDLLYCVAFVIMDKQWLERNATYMEFNEVLKSTRTQVERELLMDDVLRIEDMPSYSLLY

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G67400			ELMO/CED-12 family protein (.1...		Lus10037017 [exp]	0	1
AT1G67400			ELMO/CED-12 family protein (.1...		Lus10015790 [exp]	1.0	0.9565
AT3G52440	DOF	AtDof3,5	Dof-type zinc finger DNA-bindi...		Lus10029767 [exp]	1.7	0.8748
AT4G23740			Leucine-rich repeat protein ki...		Lus10014943 [exp]	2.2	0.8392
AT3G14760			unknown protein		Lus10042496 [exp]	4.5	0.8123
AT3G11430		ATGPAT5, GPAT5	glycerol-3-phosphate acyltrans...		Lus10017794 [exp]	5.7	0.8231
AT5G52900		MAKR6	MEMBRANE-ASSOCIATED KINASE REG...		Lus10027554 [exp]	6.0	0.8133
AT1G24530			Transducin/WD40 repeat-like su...		Lus10011402 [exp]	6.0	0.8363
AT2G24400			SAUR-like auxin-responsive pro...		Lus10026977 [exp]	7.1	0.8022
AT5G43745			Protein of unknown function (D...		Lus10039407 [exp]	7.5	0.9102
AT2G17080			Arabidopsis protein of unknown...		Lus10023962 [exp]	10.6	0.8027

Compare expression of checked genes

Lus10037017 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.