Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11860 99 / 3e-24 SSP5 SCP1-like small phosphatase 5 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037019 [exp] 490 / 3e-165 AT1G67370 621 / 0.0 ASYNAPTIC 1, DNA-binding HORMA family protein (.1) Lus10015787 [exp] 465 / 4e-165 AT5G11860 410 / 8e-143 SCP1-like small phosphatase 5 (.1.2.3.4) Lus10004551 [exp] 47 / 1e-05 AT5G46410 286 / 8e-92 SCP1-like small phosphatase 4 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G054700 [exp] 238 / 1e-75 AT5G11860 380 / 2e-130 SCP1-like small phosphatase 5 (.1.2.3.4) Potri.003G173700 [exp] 236 / 6e-75 AT5G11860 388 / 2e-133 SCP1-like small phosphatase 5 (.1.2.3.4)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10037018 pacid=23171171 polypeptide=Lus10037018 locus=Lus10037018.g ID=Lus10037018.BGIv1.0 annot-version=v1.0 ATGCAAACCAAAAAGAGGGTTTCTGGGAGGAATAGTTGTAGAGAGAATGGCAACTCCAGGATCACAAGAACTCAGAAGAAAGTATCAGAAAGCACTCAAG TTGCTCAAAAGAAAGCCAGTGATCTGATTACATCTTCAGCAAGAAAGCAGAAATGTGGCACATCTGTGAAGAAACAACAGGAGCCTATTGCAGCAACAAA TTTGGATACCATATATGACATTCCCGATGAGAAGACTTTAGGGGTTGCTTCTGGGTTTGATGCGGTGAATCATGAGGTTGTTTGCAAGCTCCTTAACATT GCTGGTTGTTATGGAGGAGCTACTGAATGTGCATCAGAATCTATTTTTTCTCCTGGTTTTCACTCTTCTAAAATATCTGGAGCAGAAATTGACAGCGGAG TTAACTTCGTCAAATCATTCCGGAACGACGAGCAGGCCTCATTCCAAGATAATGCAACAGGGTACTCAACCATCGACTTTAAAACTTTTACATCCACTGC GGATGAGAGAATATCAGATACAGAGGGAACTGGCCTGTCATCTGAAGTCTCCGCTATATACCTGGCCATGAAGAACTCAAAGCTCGAGTGTGTGGACGAG CATGAACAAGATCCTATGTCCACTGATATGTGTTCAGAAGAAGAGGAGTACGAGGAGTTTGACGATTTCGACCCATATTATTTCATCAAGAACTTGCCTG AACTGTCATCTGTTATTCCCACTTTTAGACGTGGATTATTGCCCAAGCAGACTCGAAGTTGCCCTCCGACCACCCTTGTCTTGGACCTAGACGGGATTTC ATGGACAGAGTTTCTCCTCTGTTTGAGATAG
AA sequence Show only first row Show all	>Lus10037018 pacid=23171171 polypeptide=Lus10037018 locus=Lus10037018.g ID=Lus10037018.BGIv1.0 annot-version=v1.0 MQTKKRVSGRNSCRENGNSRITRTQKKVSESTQVAQKKASDLITSSARKQKCGTSVKKQQEPIAATNLDTIYDIPDEKTLGVASGFDAVNHEVVCKLLNI AGCYGGATECASESIFSPGFHSSKISGAEIDSGVNFVKSFRNDEQASFQDNATGYSTIDFKTFTSTADERISDTEGTGLSSEVSAIYLAMKNSKLECVDE HEQDPMSTDMCSEEEEYEEFDDFDPYYFIKNLPELSSVIPTFRRGLLPKQTRSCPPTTLVLDLDGISWTEFLLCLR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G11860		SSP5	SCP1-like small phosphatase 5 ...		Lus10037018 [exp]	0	1
AT2G22610			Di-glucose binding protein wit...		Lus10035954 [exp]	10.1	0.9181
AT1G33410		NUP160, SAR1, A...	ARABIDOPSIS NUCLEOPORIN 160, S...		Lus10039130 [exp]	11.4	0.9057
AT4G22970		RSW4, AESP	RADIALLY SWOLLEN 4, homolog of...		Lus10006990 [exp]	11.5	0.9090
AT3G43610			Spc97 / Spc98 family of spindl...		Lus10008428 [exp]	13.2	0.9017
AT5G60930			P-loop containing nucleoside t...		Lus10000392 [exp]	13.3	0.9076
AT5G60930			P-loop containing nucleoside t...		Lus10032847 [exp]	13.4	0.8904
AT5G17020		HIT2, ATXPO1, A...	HEAT-INTOLERANT 2, ARABIDOPSIS...		Lus10025853 [exp]	14.3	0.9035
AT5G18700		RUK, EMB3013	RUNKEL, EMBRYO DEFECTIVE 3013,...		Lus10012799 [exp]	15.4	0.9169
AT2G38770		EMB2765	EMBRYO DEFECTIVE 2765, P-loop ...		Lus10019778 [exp]	26.3	0.9001
AT1G14650			SWAP (Suppressor-of-White-APri...		Lus10025704 [exp]	31.4	0.8882

Compare expression of checked genes

Lus10037018 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.