Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67370 560 / 0 ASY1, ATASY1 ASYNAPTIC 1, DNA-binding HORMA family protein (.1) AT5G11860 279 / 4e-85 SSP5 SCP1-like small phosphatase 5 (.1.2.3.4) AT1G67360 235 / 2e-70 Rubber elongation factor protein (REF) (.1), Rubber elongation factor protein (REF) (.2) AT4G32200 150 / 3e-36 ASY2 DNA-binding HORMA family protein (.1) AT5G46410 135 / 3e-33 SSP4 SCP1-like small phosphatase 4 (.1.2) AT4G18140 124 / 9e-30 SSP4b SCP1-like small phosphatase 4b (.1.2.3) AT2G47780 100 / 4e-23 Rubber elongation factor protein (REF) (.1) AT3G05500 94 / 7e-21 Rubber elongation factor protein (REF) (.1) AT1G29770 65 / 6e-11 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT1G29780 64 / 6e-11 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015786 [exp] 901 / 0 AT1G67370 600 / 0.0 ASYNAPTIC 1, DNA-binding HORMA family protein (.1) Lus10015787 [exp] 711 / 0 AT5G11860 410 / 8e-143 SCP1-like small phosphatase 5 (.1.2.3.4) Lus10030933 [exp] 669 / 0 AT1G67370 655 / 0.0 ASYNAPTIC 1, DNA-binding HORMA family protein (.1) Lus10040113 [exp] 622 / 0 AT1G67370 626 / 0.0 ASYNAPTIC 1, DNA-binding HORMA family protein (.1) Lus10037018 [exp] 476 / 3e-159 AT5G11860 108 / 1e-27 SCP1-like small phosphatase 5 (.1.2.3.4) Lus10004596 [exp] 158 / 8e-41 AT5G46410 398 / 3e-135 SCP1-like small phosphatase 4 (.1.2) Lus10025376 [exp] 151 / 7e-39 AT5G46410 343 / 2e-114 SCP1-like small phosphatase 4 (.1.2) Lus10015171 [exp] 109 / 2e-26 AT3G05500 282 / 1e-96 Rubber elongation factor protein (REF) (.1) Lus10031493 [exp] 109 / 2e-25 AT3G05500 285 / 4e-96 Rubber elongation factor protein (REF) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G173200 [exp] 679 / 0 AT1G67370 746 / 0.0 ASYNAPTIC 1, DNA-binding HORMA family protein (.1) Potri.001G055201 [exp] 623 / 0 AT1G67370 700 / 0.0 ASYNAPTIC 1, DNA-binding HORMA family protein (.1) Potri.003G173700 [exp] 424 / 3e-136 AT5G11860 388 / 2e-133 SCP1-like small phosphatase 5 (.1.2.3.4) Potri.001G054700 [exp] 421 / 3e-135 AT5G11860 380 / 2e-130 SCP1-like small phosphatase 5 (.1.2.3.4) Potri.001G055300 [exp] 248 / 4e-75 AT1G67360 249 / 1e-83 Rubber elongation factor protein (REF) (.1), Rubber elongation factor protein (REF) (.2) Potri.003G173100 [exp] 223 / 4e-66 AT1G67360 239 / 7e-80 Rubber elongation factor protein (REF) (.1), Rubber elongation factor protein (REF) (.2) Potri.001G353700 [exp] 159 / 9e-41 AT5G46410 409 / 2e-138 SCP1-like small phosphatase 4 (.1.2) Potri.011G078300 [exp] 152 / 5e-39 AT5G46410 419 / 1e-143 SCP1-like small phosphatase 4 (.1.2) Potri.002G206000 [exp] 116 / 6e-29 AT3G05500 238 / 4e-79 Rubber elongation factor protein (REF) (.1) Potri.013G017300 [exp] 112 / 3e-27 AT3G05500 258 / 6e-87 Rubber elongation factor protein (REF) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0651 [flax] [poplar] Mad2 PF02301 [flax] [poplar] HORMA HORMA domain CL0137 [flax] [poplar] HAD PF03031 [flax] [poplar] NIF NLI interacting factor-like phosphatase CL0137 [flax] [poplar] PF05755 [flax] [poplar] REF Rubber elongation factor protein (REF)
Representative CDS sequence Show only first row Show all	>Lus10037019 pacid=23171330 polypeptide=Lus10037019 locus=Lus10037019.g ID=Lus10037019.BGIv1.0 annot-version=v1.0 ATGCAAACCAAAAAGAGGGTTTCTGGGAGGAATAGTTGTAGAGAGAATGGAAACTCCAGGATCACAAGAACTCAGAAGAAAGTATCAGAAAACACCCAAG TTGCTCAAAAGAAAGCCAGTGATCTGATTGCATCTTCAGCAAGAAAGCAGAAATGTGGCACATCTGTGAAGAAACAACAGGAGCCTATTGCAGCAACAAA TTTGGATACCATATATGACATTCCCGATGAGAAGACGTTAGGGGTTGCTTCTGGGTTTGATGCGGTGAATCACGAGGTTGTTTGCAAGTTCCTTAACATT GCTGTTTGTTATGGAGGAGCTACTGAATGCGCATCAGAATCTATTTTTTCTCCTGGTTTTCACTCTTCTAAAATATCTGGAGCAGAAATTGACAGCGGAG TTAACTTCGTCAAATCATTCCGGAACAACGAGCAGGCCTCATTCCAAGATAATGCAACAGGGTACTCAACCATCGACTTTAAAACTTTTACATCCACTGC GGATGAGAGAATATCAGATACAGAGGGAACTGGCCTGTCATCTGAAGTCTCCACCATATACCTGGCCATGAAGAACTCAAAGCTCGAGTGTGTGGATGAG CATGAACAAGATCCTATGGCCACTGATATGTGTTCGGAAGAAGAGGAGTACGAGGAGTTTGACGATTTCGACCCATATTATTTCATCAAGAACTTGCCTG AACTGTCATCTGTTATTCCCACTTTTAGACGTGGATTATTGCCCAAGCAGACTCGAAGTTGCCCTCCGACCACCCTTGTCTTGGACCTAGACGAGACTTT GGTGCACTCCTCGCTAGAACCATGTGACGGTGCTGACTTTACATTTCCTGTAGTCGTTAATCAAGAAAAGCATATGGTTTATGTTCGATGCCGTCCTCAT CTCAGGGATTTCATGGACAGAGTTTCTCCTCTGTTTGAGATAGCCATATTTACAGCTAGCCAAAGGAACTATGTCAAAGATTTGACGATCCTTGGACGTG ATTTGGCTCGTGTTATCATAATCGACAACTCCCCTCAGGCATTCGGGTTCCAAGTAGACAACGGCATCCCCATCGAAAGCTGGTTTGACGATCCTACAGA CCAGGAACTACTCCTACTACTGCCATTCTTGGAGAGCTTGGTGGGTGTGGAAGATGTTCGGCCATTGATCGCTAGGAAATTCAACCTTCAACAGAAAGTA GCTGCTGCTACTTTTCCCTCTATTAGCTCAAGTGGAGACCCATTTGAAAGCTGTGGTAAGAAAGCTGTATCCAGTTTGTACAATGGATTCAAGATTGTCG TCGCGCAGAAGGTGAAGGAAGCGGAGATCACTGAGCAGGACTCCCTTCTACTGACTCGAAATCTACTGCGGATTGCAATATTCAATATCAGCTACATCAG AGGTTTATTTCCGGAGAAATATTTCACGGACAAGAATGTTCCTGCATTAGGTGTCTATGATGCACTACAGCAAAAGTACCTTAAGACGCTTCTGTTCTGT GTCTGTGAGGCAATAGACGGACCTATGATCGAGGAGTATGCATTTTCTTTTAGTTATTCTGATTCTGATAGTCAAGAGGTCTCCATGAACGTTAACCGCA TTGGAAACAAGAAAAAGGGAGGAAGCTTCAAGTGTAATTCCGTGGCAGAGGTTACTCCTAATCAAATGAGGAGTTCGGCTTGTAAAATGGTGCGGACACT TGTTCAGCTGATGAGAACTCTAGACAAGATGCCAGAGGAGCGCACTATACTGATGAAACTGCTCTATTATGACGATGTCACGCCATCAGATTACGAGCCA CCGTTCTTCAAAGGGTGCTCAGATGAAGATGGTCATAATTCATGGACTAAAAGTCCTTTGAAGATGGAGGTGAAAAGTGTGCTTGATCCATGTGACGATG AAGATGGAGACATGGAAGACAATGATGTGAGCTTAGGATCAGGTTATTCTGATGAAAGAGACGATTCTTCGGACTCCGATACTGAGATTAACCAATCACA ACAAGACCGTTACGTAGTAGCACCAGCTGGAAATCGGCAACCGGAACCAGATGATACTGCCATGGTCGATGAAGATGATACGCAGGATCCTGAAGAAGAT GAACAACAACTGGCTAGGGTGAAGAACTGGATTAATAATTACCACCGTGACACAGTTGAATTGACTGATATTCTCTCGACCTTCACTGATATCTCAATGG CATTAACTGAAGAAATCGTAGAGAAGCTTGTAAAGGAAGGTCTTCTATCAAATGGTGGAACAGATATTTACAGTATAAACAAGAACAAGGTCTCCGAATA TGATTTCGATGCTGTTAAAGAGGAAGCGGACAACCAGGCTGTAGCGCTTGGGGATGACCAGTTGTACATGAAGGCTTTGTACCATACACTTCCAATGACC TACGTGACAATCCCAAACCTTCAGAGTAAACTAGGCGGTGGAGCCAGTCTGAATACAATGCGTAAACTTGTTAATAAGATGACCAAAGATGGTTACCTTG AAGCCAAAGGCAGCCGTAGACTAGGCAAGCGTGTTATCCACTCCATAACGACCGAGAGAAAGCTTCTGGAAGTCAAGAGAGCCCTTCAAATCGATTCAAT GGATCTTGACACTAACGAACCACAATCGATGAAGAAAGTGCCACTTGAATTCCCCACAAAAGGGACAGACCCGAGGGACAACAACTCAACATGTGGAGCT CTCCGTTCTTTAGGCTCGGATCTTACCCGCATGAAGCTTAGATCGGATATGAATGAGAACGGTTCAATCCGAACCGAGCAGACTTTCTCCAAGACAAGGG AGCATGGAAACACCCCTACTAGCAGAGCCGAACCCGTTGCTTCTCGAGAGAGTTTCGCCCCTGGCAACGAGGAAGAAGCCATTATCTGCAGCAGATCCAC TCAAGACAAGAAGTCAAGGAAAACCAGCATGGTTGAGGACCCCATTCTTCAGTTCAAACGCCAGAAATCTCAAGCATCATCAGAGGTCGAGGTGAAGACG TTGAACACTGGTCCGGAACTGAAACACTTGGGGATCTTGAGGTTGGCCGCGATCAAGACGCTGGTGTGCGTCTCGAATCTGTACGGCTACGCGAAGCAGA ACTCTGGACCTCTGAGATCCACCGTCGGTAGCGTTGAAAGCACCGTCTCCTCCATCGTCGACCCCGTCTATCAGAAGTTCAAAGGGGTACCTGATATGCT TCTCGTCTTCTTCGATCGGAAGGTGGGCGAAGCTGCACACAAGTTCGACAAGCACGCCCCGCCATTGGCAAAGCAAGTAGTGAGCCAAGCCCAGTCTCTG GTCCATTCCACGACCGAAAAGGCTCAGAAGCTTGTGGACGAAGCTCGAACCGGAGGTCCACGAGCTGCCTTCTCGTACACCGTGACGGAAATGAAGCATG TTGTGCTGACTAATTCCGTCAAGGCATGGTGCATTCTGGACAAGTACCCTTCAGTCCACAAGATTGGAGCCAAAGCTCTACCAACTGCTGCTCGCTGGTC AGACAAGTACAATCACAATGTTAATGATTTGAGCCAGAAGGGGTACCCGCTGGTTGGCTATCTACCTTTGGTGCCGATCGACGAGATCGAGAAGACCTTT AAGGAGGAGAAGGGGGAAGTGAAGAAAGAAGAGACGAACGGGACTCAACATAAGGCTGATGAGAAAGACTCGTCTTCATCGGATTCGGATTAG
AA sequence Show only first row Show all	>Lus10037019 pacid=23171330 polypeptide=Lus10037019 locus=Lus10037019.g ID=Lus10037019.BGIv1.0 annot-version=v1.0 MQTKKRVSGRNSCRENGNSRITRTQKKVSENTQVAQKKASDLIASSARKQKCGTSVKKQQEPIAATNLDTIYDIPDEKTLGVASGFDAVNHEVVCKFLNI AVCYGGATECASESIFSPGFHSSKISGAEIDSGVNFVKSFRNNEQASFQDNATGYSTIDFKTFTSTADERISDTEGTGLSSEVSTIYLAMKNSKLECVDE HEQDPMATDMCSEEEEYEEFDDFDPYYFIKNLPELSSVIPTFRRGLLPKQTRSCPPTTLVLDLDETLVHSSLEPCDGADFTFPVVVNQEKHMVYVRCRPH LRDFMDRVSPLFEIAIFTASQRNYVKDLTILGRDLARVIIIDNSPQAFGFQVDNGIPIESWFDDPTDQELLLLLPFLESLVGVEDVRPLIARKFNLQQKV AAATFPSISSSGDPFESCGKKAVSSLYNGFKIVVAQKVKEAEITEQDSLLLTRNLLRIAIFNISYIRGLFPEKYFTDKNVPALGVYDALQQKYLKTLLFC VCEAIDGPMIEEYAFSFSYSDSDSQEVSMNVNRIGNKKKGGSFKCNSVAEVTPNQMRSSACKMVRTLVQLMRTLDKMPEERTILMKLLYYDDVTPSDYEP PFFKGCSDEDGHNSWTKSPLKMEVKSVLDPCDDEDGDMEDNDVSLGSGYSDERDDSSDSDTEINQSQQDRYVVAPAGNRQPEPDDTAMVDEDDTQDPEED EQQLARVKNWINNYHRDTVELTDILSTFTDISMALTEEIVEKLVKEGLLSNGGTDIYSINKNKVSEYDFDAVKEEADNQAVALGDDQLYMKALYHTLPMT YVTIPNLQSKLGGGASLNTMRKLVNKMTKDGYLEAKGSRRLGKRVIHSITTERKLLEVKRALQIDSMDLDTNEPQSMKKVPLEFPTKGTDPRDNNSTCGA LRSLGSDLTRMKLRSDMNENGSIRTEQTFSKTREHGNTPTSRAEPVASRESFAPGNEEEAIICSRSTQDKKSRKTSMVEDPILQFKRQKSQASSEVEVKT LNTGPELKHLGILRLAAIKTLVCVSNLYGYAKQNSGPLRSTVGSVESTVSSIVDPVYQKFKGVPDMLLVFFDRKVGEAAHKFDKHAPPLAKQVVSQAQSL VHSTTEKAQKLVDEARTGGPRAAFSYTVTEMKHVVLTNSVKAWCILDKYPSVHKIGAKALPTAARWSDKYNHNVNDLSQKGYPLVGYLPLVPIDEIEKTF KEEKGEVKKEETNGTQHKADEKDSSSSDSD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G67370		ASY1, ATASY1	ASYNAPTIC 1, DNA-binding HORMA...		Lus10037019 [exp]	0	1
AT2G27510		ATFD3	ferredoxin 3 (.1)		Lus10034144 [exp]	4.1	0.8998
AT4G24370			unknown protein		Lus10017369 [exp]	6.5	0.8845
AT2G01140		PDE345	PIGMENT DEFECTIVE 345, Aldolas...		Lus10035247 [exp]	7.7	0.8866
AT5G13420			Aldolase-type TIM barrel famil...		Lus10032613 [exp]	8.1	0.8930
AT1G07940			GTP binding Elongation factor ...		Lus10040378 [exp]	8.7	0.8689
AT5G04410	NAC	NAC2, ANAC078	Arabidopsis NAC domain contain...		Lus10017458 [exp]	9.4	0.8740
AT2G39770		VTC1, SOZ1, GMP...	VITAMIN C DEFECTIVE 1, SENSITI...		Lus10024356 [exp]	11.2	0.8828
AT1G07890		ATAPX01, CS1, A...	maternal effect embryo arrest ...		Lus10013537 [exp]	12.7	0.8915
AT1G26830		CUL3A, ATCUL3A,...	cullin 3A, cullin 3 (.1)		Lus10036739 [exp]	13.7	0.8546
AT1G26270			Phosphatidylinositol 3- and 4-...		Lus10000011 [exp]	15.0	0.8695

Compare expression of checked genes

Lus10037019 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.