Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67350 145 / 6e-46 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015785 [exp] 197 / 1e-66 AT1G67350 146 / 2e-47 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G055400 [exp] 159 / 1e-51 AT1G67350 152 / 8e-50 unknown protein Potri.003G173000 [exp] 157 / 1e-50 AT1G67350 149 / 2e-48 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10037020 pacid=23171294 polypeptide=Lus10037020 locus=Lus10037020.g ID=Lus10037020.BGIv1.0 annot-version=v1.0 ATGGGAAAAGGTTGGGTTTCTCCGGCAGAGTTTCTGCTCCTCCGTCCTGCCACCATCCATGAACAGCCAATTAATTATAGACGTCTCATGGGATCTGAAT CGGAACTCCTTCAACCTCCATTCGCTCCGACTCACAGAGTTTCACAGATTAAACAAAGAACAATCGGAGCTCAGCTTGCGTACGAGGAGATGGGATTCAT CAAGGAGTTTGCGGAGAATTTGATCCTGAGGTTGATGGAGGATCCGAAGGAGAGGGACAAGAACTTCAGGGATCATTTGTACTCGATGAAGGATCGTTGC AAGAGGACGAAGGAGATGTGGAGCTATCCACTCCGCCCTTACGGATTCTGGACGTTCGATCGCCACAACGCTCAGCTGTTCTGGGATGCTCAGATTAGCC AGGTCGCCGGCAGGAGGGACCCCTACGATGACATTCTCCAGGACCTCGGTGGGCCCAAGAGCCCCAAGTGA
AA sequence Show only first row Show all	>Lus10037020 pacid=23171294 polypeptide=Lus10037020 locus=Lus10037020.g ID=Lus10037020.BGIv1.0 annot-version=v1.0 MGKGWVSPAEFLLLRPATIHEQPINYRRLMGSESELLQPPFAPTHRVSQIKQRTIGAQLAYEEMGFIKEFAENLILRLMEDPKERDKNFRDHLYSMKDRC KRTKEMWSYPLRPYGFWTFDRHNAQLFWDAQISQVAGRRDPYDDILQDLGGPKSPK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G67350			unknown protein		Lus10037020 [exp]	0	1
AT5G18850			unknown protein		Lus10033997 [exp]	1.0	0.9053
AT5G28490		OBO2, LSH1	ORGAN BOUNDARY 2, LIGHT-DEPEND...		Lus10042565 [exp]	3.5	0.8931
AT5G51550		EXL3	EXORDIUM like 3 (.1)		Lus10031709 [exp]	5.2	0.8715
AT3G18410			Complex I subunit NDUFS6 (.1.2...		Lus10009665 [exp]	6.0	0.8765
AT1G45688			unknown protein		Lus10025793 [exp]	6.7	0.8812
AT1G64140			unknown protein		Lus10024712 [exp]	8.0	0.8829
					Lus10011339 [exp]	12.0	0.8706
AT5G47890			NADH-ubiquinone oxidoreductase...		Lus10011053 [exp]	13.4	0.8218
AT3G63000		NPL41	NPL4-like protein 1 (.1)		Lus10021567 [exp]	14.3	0.8845
AT1G28220		ATPUP3	purine permease 3 (.1)		Lus10020416 [exp]	14.7	0.8753

Compare expression of checked genes

Lus10037020 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.