Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67340 293 / 3e-97 HCP-like superfamily protein with MYND-type zinc finger (.1) AT5G50450 267 / 7e-88 HCP-like superfamily protein with MYND-type zinc finger (.1) AT1G74875 42 / 0.0003 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015784 [exp] 475 / 8e-169 AT1G67340 474 / 5e-168 HCP-like superfamily protein with MYND-type zinc finger (.1) Lus10006418 [exp] 378 / 3e-130 AT1G67340 492 / 1e-174 HCP-like superfamily protein with MYND-type zinc finger (.1) Lus10011362 [exp] 325 / 1e-110 AT1G67340 352 / 5e-121 HCP-like superfamily protein with MYND-type zinc finger (.1) Lus10037978 [exp] 51 / 5e-07 AT1G67623 82 / 3e-18 F-box family protein (.1) Lus10038709 [exp] 50 / 7e-07 AT1G67623 90 / 3e-21 F-box family protein (.1) Lus10022147 [exp] 49 / 7e-07 AT1G67623 78 / 5e-18 F-box family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G056800 [exp] 371 / 1e-127 AT1G67340 499 / 2e-177 HCP-like superfamily protein with MYND-type zinc finger (.1) Potri.003G171400 [exp] 362 / 5e-124 AT1G67340 484 / 1e-171 HCP-like superfamily protein with MYND-type zinc finger (.1) Potri.015G096200 [exp] 285 / 1e-94 AT1G67340 438 / 3e-154 HCP-like superfamily protein with MYND-type zinc finger (.1) Potri.012G097600 [exp] 283 / 9e-94 AT1G67340 436 / 2e-153 HCP-like superfamily protein with MYND-type zinc finger (.1) Potri.001G321400 [exp] 61 / 1e-10 AT1G67623 102 / 6e-26 F-box family protein (.1) Potri.013G008800 [exp] 61 / 2e-10 AT1G74875 110 / 2e-29 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10037021 pacid=23171222 polypeptide=Lus10037021 locus=Lus10037021.g ID=Lus10037021.BGIv1.0 annot-version=v1.0 ATGAGGACGAGGAGAGGCGGTTGTTACCCGCGGATAATGGATGTTTGTGTGGAGAAGAGAGTTCTCAAGAGAGGCAAAATCGATTTTGCCGCCGAAGGAG GAGGAGAAAGCGATGTTCTGAACGGAAAGAAGAGGCAGAGACTGTCGACGGAATCGTTCGCCGGCGAGAGTGATATTTTCGATGAGCTGCCGGACGATCT CGTCATCTGTATTCTCGCTAAGCTTAGCTCAACTGCTTCATCTCCTTCCGATCTTATCAACGCTCTGATAACATGCAAGAGATTCAATAGATTGGCAATT CTTCCTCAAGTACTGACGAAGGCTTCTCAGAAAACGTTCGCTATCAAGGCGGCGAACTGGTCGGAATCTGCTCACCGGTTTCTGAAGCTTTGCGCCGACG CCGGGAATGTTGAGGCCTGCTATACTCTCGGCATGATTCGGTTTTACTGTTTGGCAAATCGAGGCAGCGGAGCTTCGTTGATGGCCAAGGCGGCGATTAA CTCTCACGCGCGCTCGCTGTACTCACTGGCTGTCATTCAGTTCAACGGAAGCGGTGGCTCCAAGAGCGACAAGGATCTCCGAGCTGGAGTAGCCCTCTGC GCACGCGCCGCCTTCCTCGGCCATATAGATGCCTTGCGTGAGCTCGGCCACTGCCTCCAGGACGGCTACGGTGTCCGCCAGGGCCGCGGCGCCCGACAGA ACGGCGCCGAGCGTCGACGGTTCCTCGAACAAGCCAATGCCAGGGAGCTAGCGGCGGTGCTTTCCAATCCGAACACCGGTGGTCTTTCAACCTCGCGGCC ATGGATGACGTGGAACACCCACGCGCACTCAAACCACCGTCTCGGCAGCGGCGGAGGGGGGGGGCGCGTGGGGCGGTGGGGCGGCGCGGTGTGGATGTGG NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNTCGGTGA
AA sequence Show only first row Show all	>Lus10037021 pacid=23171222 polypeptide=Lus10037021 locus=Lus10037021.g ID=Lus10037021.BGIv1.0 annot-version=v1.0 MRTRRGGCYPRIMDVCVEKRVLKRGKIDFAAEGGGESDVLNGKKRQRLSTESFAGESDIFDELPDDLVICILAKLSSTASSPSDLINALITCKRFNRLAI LPQVLTKASQKTFAIKAANWSESAHRFLKLCADAGNVEACYTLGMIRFYCLANRGSGASLMAKAAINSHARSLYSLAVIQFNGSGGSKSDKDLRAGVALC ARAAFLGHIDALRELGHCLQDGYGVRQGRGARQNGAERRRFLEQANARELAAVLSNPNTGGLSTSRPWMTWNTHAHSNHRLGSGGGGGRVGRWGGAVWMW XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G67340			HCP-like superfamily protein w...		Lus10037021 [exp]	0	1
AT3G44850			Protein kinase superfamily pro...		Lus10005363 [exp]	2.4	0.8148
AT3G06240			F-box family protein (.1)		Lus10038603 [exp]	8.0	0.7607
AT2G15695			Protein of unknown function DU...		Lus10019874 [exp]	8.1	0.8225
AT3G17770			Dihydroxyacetone kinase (.1)		Lus10031879 [exp]	8.3	0.8204
AT1G03140			splicing factor Prp18 family p...		Lus10042599 [exp]	10.2	0.8139
AT5G60230		ATSEN2, SEN2	splicing endonuclease 2 (.1.2)		Lus10019074 [exp]	11.4	0.8229
AT1G03140			splicing factor Prp18 family p...		Lus10022049 [exp]	11.5	0.8011
AT1G03350			BSD domain-containing protein ...		Lus10012761 [exp]	14.8	0.8192
AT5G13570		TDT, DCP2, ATDC...	TRIDENT, decapping 2 (.1.2)		Lus10023516 [exp]	15.7	0.7980
AT1G15670			Galactose oxidase/kelch repeat...		Lus10017300 [exp]	17.5	0.8180

Compare expression of checked genes

Lus10037021 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.