Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11780 425 / 9e-150 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1) AT3G14160 64 / 3e-11 2-oxoglutarate-dependent dioxygenase family protein (.1) AT5G01780 58 / 3e-09 2-oxoglutarate-dependent dioxygenase family protein (.1.2) AT3G14140 49 / 2e-06 2-oxoglutarate-dependent dioxygenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015782 [exp] 609 / 0 AT1G11780 473 / 8e-169 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1) Lus10025260 [exp] 55 / 3e-08 AT3G14160 308 / 8e-102 2-oxoglutarate-dependent dioxygenase family protein (.1) Lus10009087 [exp] 52 / 6e-08 AT5G01780 176 / 1e-54 2-oxoglutarate-dependent dioxygenase family protein (.1.2) Lus10033471 [exp] 52 / 3e-07 AT3G14160 305 / 2e-100 2-oxoglutarate-dependent dioxygenase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G171900 [exp] 488 / 3e-174 AT1G11780 468 / 3e-166 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1) Potri.016G132300 [exp] 56 / 1e-08 AT5G01780 307 / 1e-101 2-oxoglutarate-dependent dioxygenase family protein (.1.2) Potri.003G070100 [exp] 50 / 2e-06 AT3G14160 348 / 2e-115 2-oxoglutarate-dependent dioxygenase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10037023 pacid=23171047 polypeptide=Lus10037023 locus=Lus10037023.g ID=Lus10037023.BGIv1.0 annot-version=v1.0 ATGTACAAATCCGATAGCCTCGCCGACGAAGCGGCGGAGCATTCAGCGTTCAAGAGAGCGGAGAAGAAGTACAAGCTGTATTACGACCAGTCCTCTAAAA AGAAGAAGAAGCCGAAACCAGTCGATTTGTCGGAGGTCCTGGATTTCGATTCGATTCTCAACTCATTCAATCATAACGAAGAGCTTCCTCGTGGAATCGC TGCTGTTCAATGCGGCGGCTTCGATCGCTCTGTTTTTCACCTGGAAAGTAGTCCTGGATTTTATTTCCTTCCTGGAGCACTGAGTTTAGAAGAGCAATGC CGGTGGATAAGAGAGGGGTTAACGAGCTTTCCTCAGCCTCCTAATAGAACCAATCATAATGCCATCTACGGACCGGTCAGTGACTTATTCGATGCAGCAA AAGATGGGAAAGTACTGATGGAGAATGTTTGCAGCAATGGAGATGCTCAACTATGGAGATTTTGTGATGATGATGCGAGATCAAGAGGTGATGCTTGTAA ATCTGTCTCAGCTTCAGTTCTGTTGCGGAAGCTGCGTTGGAGCACTCTTGGTTTGCAATTCGACTGGTCCAAGAGGAATTACAACGTATCTCTACCCCAT AAAAAGATCCCAGAAGAGCTTTGTGAGCTAGCTCAAAAGTTGGCTGCTCCTGCAATGCCAATGGGAGATGAGTTCCGCCCTGAAGCAGCAATTGTGAACT ATTTCAGTCTAGGTGATACACTAGGAGGCCATCTCGATGATATGGAAGAAGACTGGAGCAAACCCATCGTAAGCATGAGTTTGGGATGCAAAGCTATCTT CCTGCTCGGAGGCAAATCAAGAGACGACCCTCCTTTAGCGATGTTTCTCCGAAGTGGTGATGTTGTCCTAATGGCTGGAGAAGCAAGAGAATGCTTTCAT GGCGTGCCTCGGATCTTCATCGACGAGGAAAATGCTGAAATTACAAGCCTGGAGACACATTTCTCAGAGGAAACCCATATTCTAGACTACATCAGAACAT CAAGAATCAACATCAACATAAGACAAGTGTTCTGA
AA sequence Show only first row Show all	>Lus10037023 pacid=23171047 polypeptide=Lus10037023 locus=Lus10037023.g ID=Lus10037023.BGIv1.0 annot-version=v1.0 MYKSDSLADEAAEHSAFKRAEKKYKLYYDQSSKKKKKPKPVDLSEVLDFDSILNSFNHNEELPRGIAAVQCGGFDRSVFHLESSPGFYFLPGALSLEEQC RWIREGLTSFPQPPNRTNHNAIYGPVSDLFDAAKDGKVLMENVCSNGDAQLWRFCDDDARSRGDACKSVSASVLLRKLRWSTLGLQFDWSKRNYNVSLPH KKIPEELCELAQKLAAPAMPMGDEFRPEAAIVNYFSLGDTLGGHLDDMEEDWSKPIVSMSLGCKAIFLLGGKSRDDPPLAMFLRSGDVVLMAGEARECFH GVPRIFIDEENAEITSLETHFSEETHILDYIRTSRININIRQVF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11780			oxidoreductase, 2OG-Fe(II) oxy...		Lus10037023 [exp]	0	1
AT3G63240			DNAse I-like superfamily prote...		Lus10022074 [exp]	11.0	0.7033
AT3G01800			Ribosome recycling factor (.1)		Lus10035226 [exp]	11.2	0.7301
AT3G47840			Tetratricopeptide repeat (TPR)...		Lus10019098 [exp]	11.6	0.6601
AT4G39740		HCC2	homologue of copper chaperone ...		Lus10016805 [exp]	15.4	0.7114
AT5G05800			unknown protein		Lus10024453 [exp]	28.1	0.6215
AT1G09010			glycoside hydrolase family 2 p...		Lus10000159 [exp]	29.3	0.7072
AT5G35910			Polynucleotidyl transferase, r...		Lus10020293 [exp]	32.0	0.6285
AT4G03415			Protein phosphatase 2C family ...		Lus10018570 [exp]	39.5	0.6963
AT2G25660		EMB2410	embryo defective 2410 (.1)		Lus10012414 [exp]	39.8	0.6579
AT1G27070			5'-AMP-activated protein kinas...		Lus10030802 [exp]	40.0	0.6511

Compare expression of checked genes

Lus10037023 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.