Plant FIBer expression Database

Lus10037024 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G27385 206 / 9e-68 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10015781
[exp]
282 / 5e-94 AT1G27385 168 / 1e-49 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G056500
[exp]
246 / 2e-83 AT1G27385 187 / 3e-60 unknown protein
Potri.003G172000
[exp]
229 / 1e-76 AT1G27385 204 / 9e-67 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0070 ACT PF04359 DUF493 Protein of unknown function (DUF493)
Representative CDS sequence
>Lus10037024 pacid=23171052 polypeptide=Lus10037024 locus=Lus10037024.g ID=Lus10037024.BGIv1.0 annot-version=v1.0
ATGGCGTGCAGGGCAGTTCTACGCTCCGTCTTCGTAACAGAGCCATGGAGACCGTTGCATCAGACTCGGCGGCTCTACAGTTTTCCGGCGACGAACTTCG
AGTTCTCGGTTTCCGGACTGTATAATAGGAGCGTAAGGCTCCGTCGACGGTTTCACTCCGGCGAGCTGAATCATTTGAATTGCTCGCAAAACAGTGGTGT
CCCGGAGGCTGAAGATGAGCATGAAGATCAAGAGCCGCCGCAGGAAGCCGTGTTGAAAGCGATTTCAGAAGTGTCGAAGACCGAAGGGAGAGTGGGACAA
ACTACGAATGTAGTCATTGGTGGCACGGTGGCTGATGATTCGACTAACGAATGGCTTGATTTAGATAAGAAGGTTAATACGTATCCTACGGTTAGAGGGT
TTACTGCCATTGGAACTGGAGGTGATGATTTCGTTCAAGCTATGGTGGTTGCTGTTGAATCTGTGATTCAACAGCCTATTCCCCAGGGCCGTGTGAAGCA
GAAAGTATCATCAAGAGGCAAATACGTATCGGTCAACATCGGCCCCGTTCAAGTTGTTTCAAGCGAACAGGTCCAAGCTGTGTACAACGCAATGCGCAGA
GACGATCGAATGAAATACTTTTTGTAG
AA sequence
>Lus10037024 pacid=23171052 polypeptide=Lus10037024 locus=Lus10037024.g ID=Lus10037024.BGIv1.0 annot-version=v1.0
MACRAVLRSVFVTEPWRPLHQTRRLYSFPATNFEFSVSGLYNRSVRLRRRFHSGELNHLNCSQNSGVPEAEDEHEDQEPPQEAVLKAISEVSKTEGRVGQ
TTNVVIGGTVADDSTNEWLDLDKKVNTYPTVRGFTAIGTGGDDFVQAMVVAVESVIQQPIPQGRVKQKVSSRGKYVSVNIGPVQVVSSEQVQAVYNAMRR
DDRMKYFL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G27385 unknown protein Lus10037024
[exp]
0 1
AT3G27160 GHS1 GLUCOSE HYPERSENSITIVE 1, Ribo... Lus10041564
[exp]
3.2 0.9318
AT3G27160 GHS1 GLUCOSE HYPERSENSITIVE 1, Ribo... Lus10012528
[exp]
5.1 0.9423
AT2G01918 PQL3 PsbQ-like 3 (.1) Lus10004054
[exp]
6.2 0.9426
AT3G47590 alpha/beta-Hydrolases superfam... Lus10012836
[exp]
9.1 0.8716
AT1G22630 unknown protein Lus10018614
[exp]
10.6 0.9325
AT4G02725 unknown protein Lus10014675
[exp]
12.4 0.9355
AT5G44650 Y3IP1, AtCEST Ycf3-interacting protein 1, Ar... Lus10008075
[exp]
15.8 0.9278
AT2G24020 Uncharacterised BCR, YbaB fami... Lus10015490
[exp]
15.9 0.9313
AT3G10405 unknown protein Lus10037959
[exp]
21.5 0.9277
AT4G12800 PSAL photosystem I subunit l (.1) Lus10002143
[exp]
21.6 0.9294

Lus10037024 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.