Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51920 85 / 4e-18 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT4G37100 82 / 7e-17 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT2G23520 82 / 8e-17 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT4G22980 79 / 5e-16 unknown protein AT5G66950 77 / 3e-15 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015781 [exp] 568 / 0 AT1G27385 168 / 1e-49 unknown protein Lus10022447 [exp] 377 / 3e-131 AT2G23520 96 / 1e-21 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10016752 [exp] 375 / 1e-129 AT2G23520 96 / 5e-21 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10006342 [exp] 91 / 7e-20 AT5G51920 432 / 4e-144 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10038892 [exp] 89 / 3e-19 AT5G51920 578 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10002958 [exp] 88 / 6e-19 AT5G51920 396 / 5e-130 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10015013 [exp] 82 / 5e-17 AT5G51920 570 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10000751 [exp] 80 / 4e-16 AT4G37100 1141 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10019650 [exp] 80 / 4e-16 AT4G37100 1186 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G172100 [exp] 418 / 6e-147 AT5G51920 91 / 1e-19 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.012G098200 [exp] 382 / 9e-133 AT4G37100 95 / 4e-21 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.015G097000 [exp] 382 / 1e-132 AT4G37100 97 / 9e-22 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.001G056400 [exp] 206 / 3e-66 AT5G51920 59 / 1e-10 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.001G111600 [exp] 93 / 1e-20 AT4G22980 431 / 2e-144 unknown protein Potri.003G120500 [exp] 91 / 4e-20 AT5G51920 487 / 3e-166 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.015G137900 [exp] 89 / 3e-19 AT5G51920 464 / 3e-157 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.005G131300 [exp] 82 / 9e-17 AT2G23520 1227 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.007G036100 [exp] 79 / 7e-16 AT2G23520 1236 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10037025 pacid=23171087 polypeptide=Lus10037025 locus=Lus10037025.g ID=Lus10037025.BGIv1.0 annot-version=v1.0 ATGGTTAGTAACGTTGAAGAACTGATGGTGGTTGAAGACTCCAAGAAAGCACATACAGTAATCCCAGCCCACTTGGTAGCAGAAGCAATTTCAACACTAC GAGGACTGGACCTAAGATGGTCAGGACCCATCACCCCAACCGAAATGGACTACGTCAAGCAATACGTCCTCGCCAAGTACCCTCAATACTCGAACGGAAT CGTCGAAGACCACCCTGAACCAACCACAACCGAACCGAAAACCGAACCACATTCCAAAACAACATCCCCATCAACAACAACAACTCCCTCATTCAGCCGG AGCTTCTCCGACCTGGACCGGACCCAGCTCTCACAATCCCGGCTCCTCGACATCCTGACAAAGAAGGCATCGTTCCAGGGCAACTTCATCTCAATCCCGG AAATCCAGGGCCGGAACAGGGCGCTCAAGCACTGCGGGCTGAGCGAAAGGGACTATTTGGTCATTTTCATGCCGAGTTATAAAGATGCGTTGACTATGGT CGGGGAGAGCTACCCGTTTTGTAAGGGGAACTATTACATGACTATTGTCGGTGAGGAAGTTGACGGCGGGGTGAGGGTTATGGCGGCGGGGAAGGAGGCG AAAGTTGTGCCGATGCCGGAGAGTTGGCTTGACTTGAGAATCAAAGGGTCGCAGCTGAGTCAGTATTTTAGGAGGAAGTGTAAGAGTGTTCCTAAGGGGT TGTTTGCTTATCCTGCTGACCTCAACGGTACCAGGTACTCGATGCATTGGATATCGGAGGCGCACCGGAACTCGTGGCACGTATTACTGGACGCGACGGG GCTAGTTTTCGGGGAGGAGAGGCTGAACTTGGCACTGCATAGGCCGGACTTTGTGGTGTGTGGATTGGAGAACAACGGTGGGAGTGGGCATGGCTTTGTG GACAACGGTGGCCAGCAGATGATCTCCAACATTGCTTGCCTTTTGGTTAGAAAGGACTCCTTTGATACTTCTTCTTCTGAATAA
AA sequence Show only first row Show all	>Lus10037025 pacid=23171087 polypeptide=Lus10037025 locus=Lus10037025.g ID=Lus10037025.BGIv1.0 annot-version=v1.0 MVSNVEELMVVEDSKKAHTVIPAHLVAEAISTLRGLDLRWSGPITPTEMDYVKQYVLAKYPQYSNGIVEDHPEPTTTEPKTEPHSKTTSPSTTTTPSFSR SFSDLDRTQLSQSRLLDILTKKASFQGNFISIPEIQGRNRALKHCGLSERDYLVIFMPSYKDALTMVGESYPFCKGNYYMTIVGEEVDGGVRVMAAGKEA KVVPMPESWLDLRIKGSQLSQYFRRKCKSVPKGLFAYPADLNGTRYSMHWISEAHRNSWHVLLDATGLVFGEERLNLALHRPDFVVCGLENNGGSGHGFV DNGGQQMISNIACLLVRKDSFDTSSSE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G51920			Pyridoxal phosphate (PLP)-depe...		Lus10037025 [exp]	0	1
AT2G35120			Single hybrid motif superfamil...		Lus10018319 [exp]	4.9	0.8475
AT4G38620	MYB	AtMYB4	myb domain protein 4 (.1)		Lus10014129 [exp]	5.9	0.8317
AT1G07710			Ankyrin repeat family protein ...		Lus10003748 [exp]	6.3	0.8357
AT2G18040		PIN1AT	"peptidylprolyl cis/trans isom...		Lus10025967 [exp]	10.4	0.8060
AT1G23800		ALDH2B7	aldehyde dehydrogenase 2B7 (.1...		Lus10012999 [exp]	11.4	0.8374
AT5G65960			GTP binding (.1)		Lus10035977 [exp]	13.4	0.7636
AT1G71980			Protease-associated (PA) RING/...		Lus10006074 [exp]	13.7	0.8073
AT5G63910		FCLY	farnesylcysteine lyase (.1)		Lus10031378 [exp]	14.7	0.8403
AT1G49420			Heavy metal transport/detoxifi...		Lus10038786 [exp]	17.7	0.7868
AT2G37550		ASP1, AGD7	yeast pde1 suppressor 1, ARF-G...		Lus10023766 [exp]	18.9	0.7972

Compare expression of checked genes

Lus10037025 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.