Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67330 382 / 1e-134 Protein of unknown function (DUF579) (.1) AT1G27930 365 / 4e-128 Protein of unknown function (DUF579) (.1) AT1G71690 241 / 7e-79 Protein of unknown function (DUF579) (.1) AT1G09610 238 / 4e-78 Protein of unknown function (DUF579) (.1) AT4G09990 234 / 2e-76 Protein of unknown function (DUF579) (.1) AT1G33800 226 / 5e-73 Protein of unknown function (DUF579) (.1) AT5G67210 171 / 2e-51 IRX15-L IRX15-LIKE, Protein of unknown function (DUF579) (.1) AT2G15440 171 / 2e-51 Protein of unknown function (DUF579) (.1) AT3G50220 167 / 7e-50 IRX15 IRREGULAR XYLEM 15, Protein of unknown function (DUF579) (.1) AT4G24910 153 / 1e-44 Protein of unknown function (DUF579) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015780 [exp] 588 / 0 AT1G67330 381 / 4e-134 Protein of unknown function (DUF579) (.1) Lus10006415 [exp] 460 / 4e-165 AT1G67330 368 / 1e-128 Protein of unknown function (DUF579) (.1) Lus10011360 [exp] 431 / 1e-153 AT1G67330 350 / 1e-121 Protein of unknown function (DUF579) (.1) Lus10012537 [exp] 314 / 1e-107 AT1G27930 313 / 2e-107 Protein of unknown function (DUF579) (.1) Lus10002954 [exp] 230 / 9e-75 AT4G09990 298 / 1e-101 Protein of unknown function (DUF579) (.1) Lus10005822 [exp] 229 / 2e-74 AT4G09990 360 / 6e-126 Protein of unknown function (DUF579) (.1) Lus10005829 [exp] 228 / 1e-73 AT4G09990 360 / 8e-126 Protein of unknown function (DUF579) (.1) Lus10002829 [exp] 169 / 8e-51 AT5G67210 296 / 5e-100 IRX15-LIKE, Protein of unknown function (DUF579) (.1) Lus10027879 [exp] 167 / 8e-50 AT5G67210 299 / 2e-101 IRX15-LIKE, Protein of unknown function (DUF579) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G172300 [exp] 417 / 2e-148 AT1G67330 369 / 1e-129 Protein of unknown function (DUF579) (.1) Potri.001G056300 [exp] 416 / 7e-148 AT1G67330 366 / 4e-128 Protein of unknown function (DUF579) (.1) Potri.019G076300 [exp] 233 / 2e-75 AT1G09610 367 / 2e-128 Protein of unknown function (DUF579) (.1) Potri.013G102200 [exp] 232 / 3e-75 AT1G33800 362 / 3e-126 Protein of unknown function (DUF579) (.1) Potri.004G226800 [exp] 231 / 5e-75 AT1G09610 424 / 4e-151 Protein of unknown function (DUF579) (.1) Potri.003G003801 [exp] 229 / 3e-74 AT1G09610 429 / 5e-153 Protein of unknown function (DUF579) (.1) Potri.009G098800 [exp] 190 / 7e-59 AT5G67210 293 / 2e-98 IRX15-LIKE, Protein of unknown function (DUF579) (.1) Potri.015G096900 [exp] 183 / 5e-56 AT4G24910 248 / 6e-81 Protein of unknown function (DUF579) (.1) Potri.001G302600 [exp] 182 / 7e-56 AT5G67210 305 / 2e-103 IRX15-LIKE, Protein of unknown function (DUF579) (.1) Potri.007G047000 [exp] 179 / 1e-54 AT5G67210 399 / 2e-140 IRX15-LIKE, Protein of unknown function (DUF579) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04669 [flax] [poplar] Polysacc_synt_4 Polysaccharide biosynthesis
Representative CDS sequence Show only first row Show all	>Lus10037026 pacid=23171199 polypeptide=Lus10037026 locus=Lus10037026.g ID=Lus10037026.BGIv1.0 annot-version=v1.0 ATGAAATCCCGACGCCTCCTGCCGGAGAAATCATGGATCCTCGCCGTAATAATGGCCGGACTCGTCTTCGTCGGAGTACTAATCGGCAGCTTCATCAGAT CCGCCGACACATCCTTCATCTGCTCCCTCGCCAGCGAGAAATTTCGCGCCGCACAAGACTACGCCTCCACCCCGCAGCAGCTCCAAGCCATCGTCCACTA CGCCACCTCCCAAACAACCCCTCAGCAAAACTTCCGCGAGATCTCCATCACTTTAGACGTCCTCAAGCGCCGATCCCCTTGCAACTTCCTCGTCTTCGGC CTCGGATTCGATTCCCTAATGTGGAGCTCCCTCAACCCGCGCGGCCGCACGATCTTCCTCGAGGAAGACCCCGCGTGGGTGAAATCGGTGCTCAAGGACG CGCCCACGCTCGACGCGTACACCGTCCAGTACCGCACGCAGCTCAAGGAAGCAGATCTGCTCCTCAAATCGTACAGGAAGGAGCCTCTCTGTTCTCCGAG CAAGGCCTACCTGAGGGGGAATTACAAGTGTCCTTTAGCGCTGACGGGGCTCCCGGAGGAGGTTTACGAGAAGGAGTGGGATGTGATTATGGTCGACGCG CCGAGAGGGTGGTTCCCTGAGGCGCCTGGTCGTATGGCAGCGATTTTTTCGGCGGCGGTTATGGCGAGGGCGAGGAAGGGATCCGGTGTGACGCACGTGT TCCTGCACGATGTGGATCGGAAGGTGGAGAAGACGTTTGCTGAGGAGTTTCTGTGTAGGAAGTATTTGGTTAAGGGAGTCGGGAGGCTGTGGCATTTCGA GATCCCGCCGGCGGCGAATATGACCGGCCAGGATGAAAACTCGTGGTTCTGTTAG
AA sequence Show only first row Show all	>Lus10037026 pacid=23171199 polypeptide=Lus10037026 locus=Lus10037026.g ID=Lus10037026.BGIv1.0 annot-version=v1.0 MKSRRLLPEKSWILAVIMAGLVFVGVLIGSFIRSADTSFICSLASEKFRAAQDYASTPQQLQAIVHYATSQTTPQQNFREISITLDVLKRRSPCNFLVFG LGFDSLMWSSLNPRGRTIFLEEDPAWVKSVLKDAPTLDAYTVQYRTQLKEADLLLKSYRKEPLCSPSKAYLRGNYKCPLALTGLPEEVYEKEWDVIMVDA PRGWFPEAPGRMAAIFSAAVMARARKGSGVTHVFLHDVDRKVEKTFAEEFLCRKYLVKGVGRLWHFEIPPAANMTGQDENSWFC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G67330			Protein of unknown function (D...		Lus10037026 [exp]	0	1
AT2G15320			Leucine-rich repeat (LRR) fami...		Lus10002822 [exp]	1.0	0.9532
AT1G61800		ATGPT2, GPT2	ARABIDOPSIS GLUCOSE-6-PHOSPHAT...		Lus10007653 [exp]	2.0	0.9413
AT3G20898			unknown protein		Lus10014904 [exp]	4.5	0.8968
AT1G17530		ATTIM23-1	translocase of inner mitochond...		Lus10006020 [exp]	5.5	0.9165
AT3G48700		ATCXE13	carboxyesterase 13 (.1)		Lus10012073 [exp]	6.7	0.9319
AT5G45420	MYB	maMYB	membrane anchored MYB, Duplica...		Lus10039841 [exp]	7.4	0.9171
					Lus10036557 [exp]	7.5	0.9054
AT3G16050		A37, ATPDX1.2	ARABIDOPSIS THALIANA PYRIDOXIN...		Lus10037545 [exp]	10.0	0.9190
AT2G16890			UDP-Glycosyltransferase superf...		Lus10022221 [exp]	10.7	0.8534
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Lus10017425 [exp]	11.7	0.9027

Compare expression of checked genes

Lus10037026 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.