Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13060 395 / 4e-130 ECT5 evolutionarily conserved C-terminal region 5 (.1.2) AT1G27960 323 / 2e-103 ECT9 evolutionarily conserved C-terminal region 9 (.1) AT5G61020 274 / 3e-85 ECT3 evolutionarily conserved C-terminal region 3 (.1.2) AT3G13460 273 / 6e-83 ECT2 evolutionarily conserved C-terminal region 2 (.1.2.3.4) AT3G03950 265 / 1e-82 ECT1 evolutionarily conserved C-terminal region 1 (.1.2.3) AT1G55500 266 / 9e-82 ECT4 evolutionarily conserved C-terminal region 4 (.1.2.3) AT3G17330 263 / 6e-81 ECT6 evolutionarily conserved C-terminal region 6 (.1.2) AT5G58190 261 / 9e-80 ECT10 evolutionarily conserved C-terminal region 10 (.1.2) AT1G79270 261 / 1e-79 ECT8 evolutionarily conserved C-terminal region 8 (.1) AT1G48110 259 / 4e-78 ECT7 evolutionarily conserved C-terminal region 7 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015778 [exp] 647 / 0 AT3G13060 360 / 5e-120 evolutionarily conserved C-terminal region 5 (.1.2) Lus10015777 [exp] 629 / 0 AT3G13060 99 / 1e-22 evolutionarily conserved C-terminal region 5 (.1.2) Lus10033335 [exp] 419 / 2e-139 AT3G13060 653 / 0.0 evolutionarily conserved C-terminal region 5 (.1.2) Lus10034792 [exp] 412 / 9e-137 AT3G13060 646 / 0.0 evolutionarily conserved C-terminal region 5 (.1.2) Lus10027582 [exp] 299 / 2e-93 AT5G58190 417 / 6e-140 evolutionarily conserved C-terminal region 10 (.1.2) Lus10002624 [exp] 277 / 2e-85 AT3G13460 449 / 8e-151 evolutionarily conserved C-terminal region 2 (.1.2.3.4) Lus10020269 [exp] 276 / 9e-84 AT3G13460 443 / 8e-147 evolutionarily conserved C-terminal region 2 (.1.2.3.4) Lus10018343 [exp] 265 / 6e-80 AT1G48110 592 / 0.0 evolutionarily conserved C-terminal region 7 (.1.2) Lus10017111 [exp] 262 / 3e-78 AT1G48110 597 / 0.0 evolutionarily conserved C-terminal region 7 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G056100 [exp] 587 / 0 AT3G13060 431 / 5e-144 evolutionarily conserved C-terminal region 5 (.1.2) Potri.014G001000 [exp] 473 / 4e-160 AT3G13060 756 / 0.0 evolutionarily conserved C-terminal region 5 (.1.2) Potri.007G002800 [exp] 473 / 4e-160 AT3G13060 732 / 0.0 evolutionarily conserved C-terminal region 5 (.1.2) Potri.006G079900 [exp] 294 / 4e-91 AT5G58190 420 / 1e-140 evolutionarily conserved C-terminal region 10 (.1.2) Potri.018G149800 [exp] 293 / 1e-90 AT5G58190 417 / 3e-139 evolutionarily conserved C-terminal region 10 (.1.2) Potri.008G080800 [exp] 266 / 5e-81 AT1G79270 424 / 2e-142 evolutionarily conserved C-terminal region 8 (.1) Potri.001G002000 [exp] 265 / 3e-80 AT3G13460 546 / 0.0 evolutionarily conserved C-terminal region 2 (.1.2.3.4) Potri.019G034300 [exp] 260 / 2e-79 AT3G13460 412 / 9e-137 evolutionarily conserved C-terminal region 2 (.1.2.3.4) Potri.003G222700 [exp] 262 / 3e-79 AT3G13460 520 / 4e-178 evolutionarily conserved C-terminal region 2 (.1.2.3.4) Potri.010G175500 [exp] 261 / 5e-79 AT1G79270 418 / 2e-140 evolutionarily conserved C-terminal region 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0178 [flax] [poplar] PUA PF04146 [flax] [poplar] YTH YT521-B-like domain
Representative CDS sequence Show only first row Show all	>Lus10037028 pacid=23171134 polypeptide=Lus10037028 locus=Lus10037028.g ID=Lus10037028.BGIv1.0 annot-version=v1.0 ATGGGTGGTTCCTTCAATTTCCAGTCCCCTTTGGGTACAGATGGGATCATGGTTGATTCTTCGCAAGCTGCTGTTAGTGTTGGTTCTTTCAGGGATGATG CTTCACCCAATGCATGTTCGTCTCAGGCGCAGGCTGCTTATCATAGAGGTTATGATGGAATGAGTAGCCGATTTGGAGTTCATCTTTCTGATGGTAACGT CGAAAGCATGGAAAATGGTGTTCATGGCATCCATGATGACTTCTCTCTTCCATTCCATGGATATGGTTATGGATCTCAAATGCCTCAGAGACAGTACTTG CCAGTTCAATCATCTTTTGATGTCCCATTCTACAATGTGCAAGAGTTCCCAAACGCCAATCAACCTTATTTCCAGCAGCATATCTCACATAACCCTCAAC ATGCTGCAGCCCCAATCCCAGTTTCTGAACTTCAATTGCCAGCCCACTCTGATCACCAAGTAGGATGCTATAGGTATGATCCTAGACCGGGCCAACCACA CAATTTGGGGTTTTCGGGTGAACGAAACAACTTTCCTGGAATGATGGGACAGTCCGCGCCCTTGCAACATGGGTTTGATTGCATCGAAGGTGGTAGCTTA TGGTCAGACTGGTCAAAGCCCGTCAATGGTGCAAACTCTTTTGTGCACTTGTCCTCATCACCATCTTGTGCTAAACCAGCGGGTGCTGTTGGTTTTCCTG AGAATCATTTTGCAGCGGCTTCTCGTCATAGAGACTCTTTTTATGACTTCGGATCCCATTCAAGTTCTAGCTATAAAACCTATCCTCAAGTACAGAATGA CCTGGACTCTGGCTATGAAGTTTCTCTTCTCAGGATGAATTGCCGAAACTTTCCCACGCTTGATGAAGCAAGGGTCGGGGGAAGGTGCAATGATTTCTCA TGCAGCTGTACTGTTGCCCTTGACACACTTAGTGAGCGAAACAAAGGACCTAGGGCATTTAAGCCCAGAAGTCAGACCCTTGGGAAAGAAACAATGGCCG ACAGACAGAGGACTGCCATAAGTGATGCTGGTAGCATGTCGCACAACAACCTGGACTCTATCACAGAGTTCAAGGATGCGAAGTTTTTCGTCATAAAATC CTACAGCGAAGACAATGTGCACAAGAGTATCAAATATGGTGTTTGGGCAAGCACCCAGAATGGCAACAAGAAACTAGACGCAGCTTACTCTGAGGCCCAG GAGAAACAAAGGGCACCCCCGGTCTTCTTGCTATTTTCGGTTAATGCTAGTGCTCAATTCTGTGGTGTAGCTGAGATGGTTGGACCTGTGGACTTCGAGA AAAGCGTGAATTACTGGCAGCAGGATAAGTGGACTGGACAATTCCCAGTCAAGTGGCATATAATAAAAGATGTTCCCAACAGTCAGTTTCGCCACATTAT ACTCGAAAACAACGACAATAAACCTGTTACCAACAGTAGAGATACTCAAGAGGTTCAATTGGACCATGGCATTGAGATGCTGAACATATTCAACAAGTAC ATGAGCCATTCATCGATCCTCGAAGATTTCGAGTTCTACGAGGAGAGGCAGAAAGCAATGCAGGTTCGAAAGTCAAGACAGCAAGCTAACATAGCATCAT CATCTCCAGCTGCTCCCCCGGTAACCTCCACCAGCGAAAATAGCCGCGTCTCACTTCCTAACGACATCGTCAAGAAGCTGTCAAAGAGCTTTGCTGAAGC TGTTTCGGTCAATGAAGATGACGAAGCAGCAAAGCTCTCTGCCTCGTCTACCCTTCCTCTTAACGAGAAACAAACATGA
AA sequence Show only first row Show all	>Lus10037028 pacid=23171134 polypeptide=Lus10037028 locus=Lus10037028.g ID=Lus10037028.BGIv1.0 annot-version=v1.0 MGGSFNFQSPLGTDGIMVDSSQAAVSVGSFRDDASPNACSSQAQAAYHRGYDGMSSRFGVHLSDGNVESMENGVHGIHDDFSLPFHGYGYGSQMPQRQYL PVQSSFDVPFYNVQEFPNANQPYFQQHISHNPQHAAAPIPVSELQLPAHSDHQVGCYRYDPRPGQPHNLGFSGERNNFPGMMGQSAPLQHGFDCIEGGSL WSDWSKPVNGANSFVHLSSSPSCAKPAGAVGFPENHFAAASRHRDSFYDFGSHSSSSYKTYPQVQNDLDSGYEVSLLRMNCRNFPTLDEARVGGRCNDFS CSCTVALDTLSERNKGPRAFKPRSQTLGKETMADRQRTAISDAGSMSHNNLDSITEFKDAKFFVIKSYSEDNVHKSIKYGVWASTQNGNKKLDAAYSEAQ EKQRAPPVFLLFSVNASAQFCGVAEMVGPVDFEKSVNYWQQDKWTGQFPVKWHIIKDVPNSQFRHIILENNDNKPVTNSRDTQEVQLDHGIEMLNIFNKY MSHSSILEDFEFYEERQKAMQVRKSRQQANIASSSPAAPPVTSTSENSRVSLPNDIVKKLSKSFAEAVSVNEDDEAAKLSASSTLPLNEKQT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13060		ECT5	evolutionarily conserved C-ter...		Lus10037028 [exp]	0	1
AT3G13060		ECT5	evolutionarily conserved C-ter...		Lus10015777 [exp]	1.4	0.9006
AT3G13060		ECT5	evolutionarily conserved C-ter...		Lus10015778 [exp]	2.4	0.8978
AT2G47850	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10034620 [exp]	6.3	0.8982
AT1G31460			unknown protein		Lus10034756 [exp]	6.6	0.8506
AT2G30580		BMI1A, DRIP2	DREB2A-interacting protein 2 (...		Lus10033860 [exp]	7.1	0.8657
AT5G56280		CSN6A	COP9 signalosome subunit 6A (....		Lus10027082 [exp]	8.2	0.8560
AT5G03970			F-box associated ubiquitinatio...		Lus10022006 [exp]	9.7	0.8792
AT5G19680			Leucine-rich repeat (LRR) fami...		Lus10010892 [exp]	12.3	0.8523
AT5G46070			Guanylate-binding family prote...		Lus10013965 [exp]	12.4	0.8640
AT3G51670			SEC14 cytosolic factor family ...		Lus10001269 [exp]	12.7	0.8657

Compare expression of checked genes

Lus10037028 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.