Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67325 244 / 7e-80 Ran BP2/NZF zinc finger-like superfamily protein (.1.2) AT2G17975 47 / 4e-06 zinc finger (Ran-binding) family protein (.1) AT1G55040 47 / 1e-05 zinc finger (Ran-binding) family protein (.1) AT1G50300 43 / 0.0001 TAF15 TBP-associated factor 15 (.1) AT2G26695 40 / 0.0005 Ran BP2/NZF zinc finger-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006412 [exp] 303 / 1e-102 AT1G67325 374 / 1e-130 Ran BP2/NZF zinc finger-like superfamily protein (.1.2) Lus10011357 [exp] 299 / 2e-98 AT1G67325 366 / 1e-124 Ran BP2/NZF zinc finger-like superfamily protein (.1.2) Lus10015776 [exp] 161 / 3e-48 AT1G67325 192 / 8e-61 Ran BP2/NZF zinc finger-like superfamily protein (.1.2) Lus10015180 [exp] 48 / 7e-06 AT1G55040 614 / 0.0 zinc finger (Ran-binding) family protein (.1) Lus10019433 [exp] 42 / 0.0002 AT2G26695 198 / 2e-65 Ran BP2/NZF zinc finger-like superfamily protein (.1) Lus10043289 [exp] 42 / 0.0003 AT2G26695 198 / 8e-66 Ran BP2/NZF zinc finger-like superfamily protein (.1) Lus10012902 [exp] 42 / 0.0004 AT1G50300 388 / 4e-134 TBP-associated factor 15 (.1) Lus10030555 [exp] 42 / 0.0004 AT1G50300 393 / 8e-135 TBP-associated factor 15 (.1) Lus10030054 [exp] 39 / 0.001 AT2G26695 196 / 8e-66 Ran BP2/NZF zinc finger-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G172500 [exp] 305 / 6e-103 AT1G67325 374 / 3e-130 Ran BP2/NZF zinc finger-like superfamily protein (.1.2) Potri.001G056000 [exp] 292 / 7e-99 AT1G67325 340 / 5e-118 Ran BP2/NZF zinc finger-like superfamily protein (.1.2) Potri.015G038200 [exp] 48 / 4e-06 AT1G48570 335 / 4e-111 zinc finger (Ran-binding) family protein (.1) Potri.005G115100 [exp] 47 / 6e-06 AT2G17975 328 / 4e-113 zinc finger (Ran-binding) family protein (.1) Potri.012G046500 [exp] 46 / 2e-05 AT1G48570 338 / 3e-110 zinc finger (Ran-binding) family protein (.1) Potri.008G085400 [exp] 46 / 2e-05 AT1G50300 339 / 6e-115 TBP-associated factor 15 (.1) Potri.005G033000 [exp] 44 / 0.0001 AT1G55040 531 / 5e-177 zinc finger (Ran-binding) family protein (.1) Potri.013G022300 [exp] 43 / 0.0002 AT1G55040 543 / 1e-179 zinc finger (Ran-binding) family protein (.1) Potri.010G170700 [exp] 42 / 0.0003 AT1G50300 320 / 2e-107 TBP-associated factor 15 (.1) Potri.018G066900 [exp] 40 / 0.0006 AT2G26695 177 / 2e-57 Ran BP2/NZF zinc finger-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0167 [flax] [poplar] Zn_Beta_Ribbon PF00641 [flax] [poplar] zf-RanBP Zn-finger in Ran binding protein and others
Representative CDS sequence Show only first row Show all	>Lus10037029 pacid=23171345 polypeptide=Lus10037029 locus=Lus10037029.g ID=Lus10037029.BGIv1.0 annot-version=v1.0 ATGCAGAAGTTTGCTGCCAAGCCACTACAGCCCCCTCAGAATTACTCTGCTCCGGCTCCCTATGTAGGTTCCGGTGCACCATCTTCAATGTATATGGGTG TACCTCCATATGGGTCTTCTTCTATGTTCCATGGATCTTCTCTCCCTCCGTATGAGGCTCCATTTCCTGGGGGATCTGCATATCCTTACAATTATGGTAG CCGAATCTCTGGAGGAAGCCCTTACAGGCCACTCCAGATATCCACACCACCACCTTATTCTGGTGGATCTATGGTTGGGAATGGTGGTATGTACGGAATG CCCCCCTTGATGGACCGCTATGGGTTAGGCATGCCAATGGGCCCTGCTGCTATGGGCCCAAGGCCGAGTTTTTTCCCAGATCCCAGGACTCCTAAAGAGG ATTCAACTCGTGATAATGACTGGACCTGTCCAAAATGTGGCAACATGAACTTTTCCTTTAGAACTGTTTGTAATATGAGGAAATGCAATACCCCAAAGCC AGGATCCCAGGCTGCAAAGTCTGACAAAAATTCAAAACAAAACACACCAGAGGGAAGTTGGAAATGTGAAAATTGTAACAACATCAACTATCCATTCCGG TCCAAATGTAACAGACCAAGCTGTGGCGCCGAGAAACCCACTGAGCCAAAGAAGTCCCCCTCACCTACAGTTGAAGAGAATGACCAGGTTGGTTTTGTGA TCACTCTTGCTTGTATCCAAAGTCTGTTACTGCCATTGATTCCCAGTGTACCATTCAAAAACTCTATAAAGATATATCAGAAGATTCTTCCATTCCAATC CTGTTTATTTTCCCATCTTCTGCTATTGCTTAGTTGTCTTCATAATTCATGCACTCTGCTGCAACCATTTGATTTTGTGATTATTTACTGTTCCAGTGAG TACTAG
AA sequence Show only first row Show all	>Lus10037029 pacid=23171345 polypeptide=Lus10037029 locus=Lus10037029.g ID=Lus10037029.BGIv1.0 annot-version=v1.0 MQKFAAKPLQPPQNYSAPAPYVGSGAPSSMYMGVPPYGSSSMFHGSSLPPYEAPFPGGSAYPYNYGSRISGGSPYRPLQISTPPPYSGGSMVGNGGMYGM PPLMDRYGLGMPMGPAAMGPRPSFFPDPRTPKEDSTRDNDWTCPKCGNMNFSFRTVCNMRKCNTPKPGSQAAKSDKNSKQNTPEGSWKCENCNNINYPFR SKCNRPSCGAEKPTEPKKSPSPTVEENDQVGFVITLACIQSLLLPLIPSVPFKNSIKIYQKILPFQSCLFSHLLLLLSCLHNSCTLLQPFDFVIIYCSSE Y

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G67325			Ran BP2/NZF zinc finger-like s...		Lus10037029 [exp]	0	1
AT5G61790		CNX1, ATCNX1	calnexin 1 (.1)		Lus10032521 [exp]	4.5	0.8822
AT2G40620	bZIP	AtbZIP18	Basic-leucine zipper (bZIP) tr...		Lus10012881 [exp]	14.9	0.8365
AT1G26460			Tetratricopeptide repeat (TPR)...		Lus10026663 [exp]	16.0	0.8568
AT1G56340		AtCRT1a, CRT1	calreticulin 1a (.1.2)		Lus10010923 [exp]	16.4	0.8688
AT1G11680		EMB1738, CYP51A...	embryo defective 1738, CYTOCHR...		Lus10001713 [exp]	17.4	0.8575
AT1G08010	GATA	GATA11	GATA transcription factor 11 (...		Lus10021466 [exp]	19.2	0.8421
AT4G35230		BSK1	BR-signaling kinase 1 (.1)		Lus10021823 [exp]	23.5	0.8456
AT3G16200			unknown protein		Lus10006829 [exp]	24.0	0.8476
AT1G18650		PDCB3	plasmodesmata callose-binding ...		Lus10037071 [exp]	25.7	0.8192
AT5G45330		DCP5-L	decapping 5-like (.1)		Lus10035052 [exp]	29.8	0.8377

Compare expression of checked genes

Lus10037029 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.