Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27340 609 / 0 Galactose oxidase/kelch repeat superfamily protein (.1) AT5G15710 121 / 7e-30 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G30950 119 / 3e-29 UFO UNUSUAL FLORAL ORGANS, F-box family protein (.1) AT4G33160 108 / 3e-25 F-box family protein (.1) AT3G61590 88 / 9e-19 HWS, HS HAWAIIAN SKIRT, Galactose oxidase/kelch repeat superfamily protein (.1.2) AT5G43190 77 / 7e-15 Galactose oxidase/kelch repeat superfamily protein (.1) AT5G49610 66 / 2e-11 F-box family protein (.1) AT1G12870 61 / 1e-09 F-box and associated interaction domains-containing protein (.1) AT3G49980 60 / 2e-09 F-box and associated interaction domains-containing protein (.1) AT1G33530 59 / 3e-09 F-box family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015775 [exp] 849 / 0 AT1G27340 598 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10011354 [exp] 223 / 1e-69 AT1G27340 187 / 2e-56 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10003117 [exp] 188 / 5e-58 AT1G27340 165 / 7e-50 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10003118 [exp] 137 / 1e-38 AT1G27340 115 / 2e-31 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10031955 [exp] 129 / 1e-32 AT5G15710 719 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10035147 [exp] 128 / 1e-31 AT5G15710 721 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10018690 [exp] 110 / 7e-26 AT1G30950 514 / 0.0 UNUSUAL FLORAL ORGANS, F-box family protein (.1) Lus10007755 [exp] 101 / 7e-23 AT1G30950 514 / 0.0 UNUSUAL FLORAL ORGANS, F-box family protein (.1) Lus10010610 [exp] 88 / 1e-18 AT5G43190 327 / 2e-110 Galactose oxidase/kelch repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G171300 [exp] 718 / 0 AT1G27340 628 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.001G057100 [exp] 697 / 0 AT1G27340 613 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.006G217500 [exp] 135 / 5e-35 AT4G33160 419 / 9e-145 F-box family protein (.1) Potri.004G112400 [exp] 131 / 1e-33 AT5G15710 753 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.017G102300 [exp] 128 / 2e-32 AT5G15710 744 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.003G074100 [exp] 127 / 5e-32 AT1G30950 528 / 0.0 UNUSUAL FLORAL ORGANS, F-box family protein (.1) Potri.001G160900 [exp] 122 / 3e-30 AT1G30950 554 / 0.0 UNUSUAL FLORAL ORGANS, F-box family protein (.1) Potri.002G118700 [exp] 103 / 7e-24 AT5G43190 352 / 7e-120 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.014G016200 [exp] 97 / 7e-22 AT5G43190 277 / 2e-90 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.002G166500 [exp] 89 / 7e-19 AT3G61590 542 / 0.0 HAWAIIAN SKIRT, Galactose oxidase/kelch repeat superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10037030 pacid=23171044 polypeptide=Lus10037030 locus=Lus10037030.g ID=Lus10037030.BGIv1.0 annot-version=v1.0 ATGGAACAAGAGCTGGCCATGCTCCGCCAGCTCATTGCTCAGCTTCAAGACCTCTTCACCTTCTACGGCTCTCCACCTCCTCCTCTTCCGCCCCTTCCGC CGCCGCCGCCGCCGCTACTTCCTCTTCCTATCCACCACAGCCTCCTCCTCCACCACCCTCAGAATGACAGATGTTGCATCGTCAATGTGGACGATGGGTC TACAGATGATTACTGTGGTCTGCTGATGGAGTCTGGAAAGTCGGAAACTTTCACAATGATGGAACCCAGCAACCCTCCACCCACAAAGAAATGTAGAAAA GAGCGTAGTCGAGGCAAATTTCCTTGCTCTACTAGCACAACTGAGGTGATGGAGGCAGAAATCTGGAAGGATTTCCCAGAAGATCTATTTGAAGGTGTCA TAGCCAGACTACCAGTTGCCACGTTCTTCCGCTTCCGCTCAGTCTGCCAGAAATGGAATTCCTTTCTTAATTCCGAGAGCTTCTCCCAGCATTCTGCACA AATTCCACGAACCAATCCTTGGTTCTACACCATCACGCACGAAAACGTGAATTCCGGAGCCATGTATGACCCTCACTCAAAGAAATGGTACCACCCTACG ATTTCTTCTCTTCCCATTAAGATGATCATCTTGCCAGTTGCTTCAGCAGGGGGACTTGTGTGTTTCCTCGATATTGGTCACCGGAACTTTTACGTCTGCA ACCCTCTGACTGGTTCGTTCCGAGAGTTACCCGCCCGGTCAGTTAAAGTCTGGTCTCGTGTAGCCGTTGGGATGACTTTCAACTGCAATGCTGGAAATGG GGCGTATAAGATTCTATGGGTGGGTTGTGATGGTGAGTATGAAGTGTACGACTCGGTGATCAACTCGTGGACTCATCCCGGTATCATGCCGTCCCACATC AAGCTGCCGTTATCGCTCAACTTCCGCTCGCAAGCAGTATCGATCGACGACGTGCTTTACTTCATGCGTTCGGAGCCCGAGGGAATAGTGTCGTACGATA TGGTTTCCGGGGCGTGGAAGCAGTTCGCGATACCGGATCCGCTCCATCTGAGCGATCATACGCTAGCTGAATGCTCGGGGCGGATCATTCTCGTCGGGTT GCTGACGAAAAACGCGGCCACGTGCGTTTGCATATGGGAGCTGCAAAGGATGACGCTCTTGTGGAAGGAGGTAGACAGAATGCCAAACTTGTGGTGCTTG GAATTTTACGGGAAGCACGTCAGGATGACTTGTCTGGGCAATAAAGGTTTGCTCATGCTGTCATTGAGGTCGAGACAGATGAACCGGTTGGTTACGTACG ATGTAGCGAGTAAAGAGTGGAACAAGGTTCCTGGTTGTTTGGTTCCTCGTGGGAGAAAGAGGCAGTGGATTGCTTGCGGAACGGCATTCCACCCTTCCCC TACTGCCATGGCTTGA
AA sequence Show only first row Show all	>Lus10037030 pacid=23171044 polypeptide=Lus10037030 locus=Lus10037030.g ID=Lus10037030.BGIv1.0 annot-version=v1.0 MEQELAMLRQLIAQLQDLFTFYGSPPPPLPPLPPPPPPLLPLPIHHSLLLHHPQNDRCCIVNVDDGSTDDYCGLLMESGKSETFTMMEPSNPPPTKKCRK ERSRGKFPCSTSTTEVMEAEIWKDFPEDLFEGVIARLPVATFFRFRSVCQKWNSFLNSESFSQHSAQIPRTNPWFYTITHENVNSGAMYDPHSKKWYHPT ISSLPIKMIILPVASAGGLVCFLDIGHRNFYVCNPLTGSFRELPARSVKVWSRVAVGMTFNCNAGNGAYKILWVGCDGEYEVYDSVINSWTHPGIMPSHI KLPLSLNFRSQAVSIDDVLYFMRSEPEGIVSYDMVSGAWKQFAIPDPLHLSDHTLAECSGRIILVGLLTKNAATCVCIWELQRMTLLWKEVDRMPNLWCL EFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYDVASKEWNKVPGCLVPRGRKRQWIACGTAFHPSPTAMA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G27340			Galactose oxidase/kelch repeat...		Lus10037030 [exp]	0	1
AT4G05390		ATRFNR1	root FNR 1 (.1.2)		Lus10038538 [exp]	4.6	0.9462
AT1G43710		EMB1075	embryo defective 1075, Pyridox...		Lus10028592 [exp]	4.7	0.9408
AT1G43580			Sphingomyelin synthetase famil...		Lus10042814 [exp]	10.0	0.9119
AT4G17550		AtG3Pp4	glycerol-3-phosphate permease ...		Lus10040154 [exp]	10.5	0.9015
AT1G24530			Transducin/WD40 repeat-like su...		Lus10036881 [exp]	10.7	0.9345
AT2G30970		ASP1	aspartate aminotransferase 1 (...		Lus10020720 [exp]	11.6	0.9307
AT2G22480		PFK5	phosphofructokinase 5 (.1)		Lus10012738 [exp]	12.5	0.9069
AT1G32440		PKP3	plastidial pyruvate kinase 3 (...		Lus10000672 [exp]	12.8	0.9336
AT3G54020		AtIPCS1	Arabidopsis Inositol phosphory...		Lus10021111 [exp]	15.2	0.8905
AT4G26910			Dihydrolipoamide succinyltrans...		Lus10032633 [exp]	15.5	0.9270

Compare expression of checked genes

Lus10037030 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.