Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27320 1035 / 0 AHK3 histidine kinase 3 (.1) AT5G35750 768 / 0 AHK2 histidine kinase 2 (.1) AT2G01830 728 / 0 CRE1, AHK4, WOL1, WOL, ATCRE1 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) AT2G17820 152 / 2e-37 AHK1, ATHK1 histidine kinase 1 (.1) AT1G66340 148 / 1e-36 AtETR1, EIN1, ETR1 ETHYLENE RESPONSE 1, ETHYLENE RESPONSE, ETHYLENE INSENSITIVE 1, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) AT5G10720 139 / 2e-33 CKI2, AHK5 CYTOKININ INDEPENDENT 2, histidine kinase 5 (.1) AT2G47430 119 / 6e-27 CKI1 CYTOKININ-INDEPENDENT 1, Signal transduction histidine kinase (.1) AT2G40940 114 / 4e-26 ERS1 ethylene response sensor 1 (.1) AT3G04580 67 / 4e-11 EIN4 ETHYLENE INSENSITIVE 4, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1.2) AT3G23150 64 / 3e-10 ETR2 ethylene response 2, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015773 [exp] 1501 / 0 AT1G27320 1395 / 0.0 histidine kinase 3 (.1) Lus10012325 [exp] 745 / 0 AT5G35750 1278 / 0.0 histidine kinase 2 (.1) Lus10006370 [exp] 734 / 0 AT5G35750 1267 / 0.0 histidine kinase 2 (.1) Lus10013250 [exp] 692 / 0 AT2G01830 1282 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) Lus10030772 [exp] 688 / 0 AT2G01830 1282 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) Lus10028992 [exp] 676 / 0 AT2G01830 1337 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) Lus10003686 [exp] 675 / 0 AT2G01830 1330 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) Lus10007357 [exp] 143 / 5e-35 AT1G66340 1211 / 0.0 ETHYLENE RESPONSE 1, ETHYLENE RESPONSE, ETHYLENE INSENSITIVE 1, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Lus10031382 [exp] 142 / 2e-34 AT1G66340 1206 / 0.0 ETHYLENE RESPONSE 1, ETHYLENE RESPONSE, ETHYLENE INSENSITIVE 1, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G171000 [exp] 1139 / 0 AT1G27320 1425 / 0.0 histidine kinase 3 (.1) Potri.001G057400 [exp] 1108 / 0 AT1G27320 1384 / 0.0 histidine kinase 3 (.1) Potri.014G164700 [exp] 810 / 0 AT5G35750 1359 / 0.0 histidine kinase 2 (.1) Potri.008G137900 [exp] 726 / 0 AT2G01830 1390 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) Potri.010G102900 [exp] 714 / 0 AT2G01830 1381 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) Potri.001G204200 [exp] 144 / 4e-35 AT1G66340 1216 / 0.0 ETHYLENE RESPONSE 1, ETHYLENE RESPONSE, ETHYLENE INSENSITIVE 1, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Potri.007G056400 [exp] 137 / 8e-33 AT2G17820 1475 / 0.0 histidine kinase 1 (.1) Potri.003G032300 [exp] 135 / 2e-32 AT1G66340 1228 / 0.0 ETHYLENE RESPONSE 1, ETHYLENE RESPONSE, ETHYLENE INSENSITIVE 1, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Potri.005G111700 [exp] 132 / 3e-31 AT2G17820 1435 / 0.0 histidine kinase 1 (.1) Potri.018G011400 [exp] 131 / 5e-31 AT5G10720 707 / 0.0 CYTOKININ INDEPENDENT 2, histidine kinase 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0025 [flax] [poplar] His_Kinase_A PF00512 [flax] [poplar] HisKA His Kinase A (phospho-acceptor) domain CL0304 [flax] [poplar] CheY PF00072 [flax] [poplar] Response_reg Response regulator receiver domain CL0025 [flax] [poplar] His_Kinase_A PF02518 [flax] [poplar] HATPase_c Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CL0165 [flax] [poplar] Cache PF03924 [flax] [poplar] CHASE CHASE domain
Representative CDS sequence Show only first row Show all	>Lus10037032 pacid=23171285 polypeptide=Lus10037032 locus=Lus10037032.g ID=Lus10037032.BGIv1.0 annot-version=v1.0 ATGAGTTTGCTCCATGTTCTTGCCTTTGGTTTAAAAGCTGGGCATCTCCTTTGGCTAGTATGCTGCTGGTTCGTCTCTGTAATTCCTCTCAACAGCTTCA TCCAAAGTGGAATTAAGCCATCCCATTCTGGCGATTTACTTGGTCATGCTGTAAAATTGTGGGAGAAGATGTCTGAGAAGAGTTGCGAGATCCACCCCCA TCATTACTATCAGTACATTTTGTTGAAGTTGGTGAGGAAATCATGGTGGAGAAAGTTTGTGGCCGGGTGGGTAATTTGCTGGATCATGATTTGTTCAAGT CTCCTTTTCTACATGAACAATCTAGCCGTGGAGTCTAGGAAAGCCACACTTGCTAGCATGTGTGATGAGAGAGCTAGGATGTTGCAGGATCAGTTTAATG TCAGCATGAACCATGTTCAAGCCATGTCTATCTTGATCTCTACTTTTCACCATGGCATGAGTCCTTCTTCCATTGATCAGAAAACATTTGCCAAGTACAC AGAAAGAACAAACTTTGAGAGGCCGCTGACAAGTGGGGTGGCATATGCTGTGAGGGTGCTCCATTCTGAAAGGAAGAAGTTTGAGAAGCAACAAGGGTGG ACCATAAGGAGGATGGATACTTTTGAGCAAAACCCAGTTCATAAAGATGATCATATACCAGAAAAGTTGGAGCCATCTCCTATCCAGGAAGAATATGCTC CCGTGATTTTTGCACAAGATACCGTTGCCCATGTCGTCTCCCTTGATGTGCTGTCTGGAAAAGAAGATAGGGACAATGTGCTAAGAGCTAGAGAATCTGG GAAAGGGGTCCTAACTGCTCCTTTTAGGCTCTTGAAAACCAATCGTCTCGGTGTAATTTTGACATTTGCTGTCTACAAAAGAGAACTCCCGCCCGATGCA ACTCCAAAGGAGAGGATTCAGGCTACTGATGGGTATCTAGGAGGTATCTTTGACATCGAGTCACTAGTCGAGAAGTTACTCCAACAACTCGCGACCAAAC AAACTATCCTGGTGAATGTATATGACACAAGTAACCAATCCCACCCGATCAGTATGTATGGCTCGGATGAGTATGTTGATCGGTTGGAGCATGTCAACAG TCTTAACTTTGGCGATCCCTTCCGAAATCATGAGATGCGATGCAGATTCAAGCAAAAAGCACCGTGGCCTTTGATGGCAATAATGACTTCCCATGGCATC CTCGTGATTGTTTTGCTCTGTAGTTCTTTAATCAATGGAACCATCAAGCGCATTGCTGAGGTAGAAGATGATCGCGATGAGATGAGAGAGCTAAAGAAAA GGGCTGAGGCTGCTGATGTAGCCAAGTCTCAATTTCTTGCTACAGTCTCTCACGAGATCAGGACCCCGATGAATGGTGTATTAGGGATGTTAGACATGCT TATGGACACTGATCTAGATGTTACTCAGCAAGACTATGTCCGAACTGCACAGGGAAGTGGGAAAGCTCTCGTCTCACTTATCAATGAGGTGCTGGACCAG GCCAAAATAGAGTCTGGCAAGCTTGATCTAGAGGCTGTTCAGTTTGATCTTCGACAAATTCTGGATGATGTTCTGTCTCTTTTCTCCGGGAAGTCTCAGG AGAAAGGGGTCGAGTTGGCAGTTTACATTTCGGACCGTGTTCCTGATATGCTCATCGGCGATCCTGGAAGGTTTCGGCAAATCATCACCAATCTCATGGG AAACTCTATAAAATTCACTGAAAAGGGACACATTCTGGTTACTGTCCATCTTGTGGAGGAAGTGATAGACTCCCTAGACATTGAGACAGAAGCATCATCA AGGAACACATTGAGTGGCTTTCCTGTAGCGGATAAACGAAGTAGCTGGGCAGAATTCAGATCATTCAACAAAGATTCATCTAAATCTAACTGCTCCTCTC CTGACCTTATCAACCTAATCATTTCAGTGGAAGATACAGGAGAAGGCATCCCTCAAGAGGATCAGCCTCGTATCTTCACACCTTTTGTTCAGGTTGGTCC ATCGATTTCGAGAAAACAAGGAGGCACTGGGATTGGCCTCAGCATCAGCAAGTGTTTAGTAACCCTCATGAATGGAGAAATCGGGTTCGTTAGCATACCG AAGATCGGTTCCACCTTCACATTCACTGCTGTTTTCACAAACGACCTCAAGAGCCAGAAACTCAACCAATCCAACTTCCCCCCGGAGTTTCAAGGCATGA GAGCCTTGGTTGTGGACTCTAGACCAGCGAGAGCAAAGATATCGAGATACCATGTCCAGAGGCTTGGGATTCAAGTCGAACTCATTCCTACATTGAGCCA AGCTTTGACTACGAATCCTCGAAACGGGGAGCTCCTACCACTTCGGAGCTTGCTTGCTGGAAGAAAGATTCTCATTGTGGATGATAATTACGTGAACCTC AAGGTAGCTACTGGTGCCTTGAAAAAGTATGGAGCTGATGTTGTCTCTGCCGAAAGCGGTCCGAAGGCTATTTCTTTCCTTGAGCCTCCTCATACCTTTG ATGCATGCTTCATGGACATTCAGATGCCTGAAATGGATGGCTTTGAAGCCACGAGAAGGATCAGAGAAATGGAACTTAGCATGAACGAACGAATTAAAAA CGGAGACCTATCGATTGAATCATGTCGAAATGTTTCGAACTGGCATGTACCAATTTTGGCAATGACTGCAGATGTTATCCAGGCTACACACGAGGAATGT ACACGATGTGGCATGGATGGATATGTTTCGAAACCATTCGAAGCTCAGCAGTTGTATCAGGAAGTTTCGCGATTTTTTACAAGTTAA
AA sequence Show only first row Show all	>Lus10037032 pacid=23171285 polypeptide=Lus10037032 locus=Lus10037032.g ID=Lus10037032.BGIv1.0 annot-version=v1.0 MSLLHVLAFGLKAGHLLWLVCCWFVSVIPLNSFIQSGIKPSHSGDLLGHAVKLWEKMSEKSCEIHPHHYYQYILLKLVRKSWWRKFVAGWVICWIMICSS LLFYMNNLAVESRKATLASMCDERARMLQDQFNVSMNHVQAMSILISTFHHGMSPSSIDQKTFAKYTERTNFERPLTSGVAYAVRVLHSERKKFEKQQGW TIRRMDTFEQNPVHKDDHIPEKLEPSPIQEEYAPVIFAQDTVAHVVSLDVLSGKEDRDNVLRARESGKGVLTAPFRLLKTNRLGVILTFAVYKRELPPDA TPKERIQATDGYLGGIFDIESLVEKLLQQLATKQTILVNVYDTSNQSHPISMYGSDEYVDRLEHVNSLNFGDPFRNHEMRCRFKQKAPWPLMAIMTSHGI LVIVLLCSSLINGTIKRIAEVEDDRDEMRELKKRAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTDLDVTQQDYVRTAQGSGKALVSLINEVLDQ AKIESGKLDLEAVQFDLRQILDDVLSLFSGKSQEKGVELAVYISDRVPDMLIGDPGRFRQIITNLMGNSIKFTEKGHILVTVHLVEEVIDSLDIETEASS RNTLSGFPVADKRSSWAEFRSFNKDSSKSNCSSPDLINLIISVEDTGEGIPQEDQPRIFTPFVQVGPSISRKQGGTGIGLSISKCLVTLMNGEIGFVSIP KIGSTFTFTAVFTNDLKSQKLNQSNFPPEFQGMRALVVDSRPARAKISRYHVQRLGIQVELIPTLSQALTTNPRNGELLPLRSLLAGRKILIVDDNYVNL KVATGALKKYGADVVSAESGPKAISFLEPPHTFDACFMDIQMPEMDGFEATRRIREMELSMNERIKNGDLSIESCRNVSNWHVPILAMTADVIQATHEEC TRCGMDGYVSKPFEAQQLYQEVSRFFTS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G27320		AHK3	histidine kinase 3 (.1)		Lus10037032 [exp]	0	1
AT1G27320		AHK3	histidine kinase 3 (.1)		Lus10015773 [exp]	1.0	0.9065
AT1G14790		ATRDRP1, RDR1	RNA-dependent RNA polymerase 1...		Lus10019164 [exp]	2.4	0.8516
					Lus10032559 [exp]	3.9	0.8439
AT2G40390			unknown protein		Lus10010225 [exp]	8.4	0.7931
AT1G16250			Galactose oxidase/kelch repeat...		Lus10002112 [exp]	9.8	0.8102
AT1G16560			Per1-like family protein (.1.2...		Lus10038885 [exp]	10.8	0.8302
AT2G01570	GRAS	RGA1	REPRESSOR OF GA1-3 1, REPRESSO...		Lus10017626 [exp]	12.5	0.7613
AT5G38840	FHA		SMAD/FHA domain-containing pro...		Lus10005098 [exp]	19.6	0.7970
AT3G09320			DHHC-type zinc finger family p...		Lus10010852 [exp]	19.9	0.7825
AT4G24200			Transcription elongation facto...		Lus10028515 [exp]	20.8	0.8106

Compare expression of checked genes

Lus10037032 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.