Plant FIBer expression Database

Lus10037034 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G27300 81 / 7e-19 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10015771
[exp]
336 / 5e-119 AT1G27300 96 / 9e-25 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G057700
[exp]
96 / 6e-25 AT1G27300 92 / 2e-23 unknown protein
Potri.003G170700
[exp]
91 / 1e-22 AT1G27300 96 / 1e-24 unknown protein
PFAM info
Representative CDS sequence
>Lus10037034 pacid=23171077 polypeptide=Lus10037034 locus=Lus10037034.g ID=Lus10037034.BGIv1.0 annot-version=v1.0
ATGGAACCGACTCAAAAGCTGCAGTTCCTCACTGAAGAAATCCAGAGGCTTATAGAAGAGAAGAAGAACCGAGAACAAGAAGAAGCCTTCGGCGCCGCCG
ATGGAAATTCCATCCCTCTTGACCACACAGATCGCCCTATCCTCTCCAGATTACTCTCCGAGTTGGAATCGTTGAAAGGAGACGGAACGCTGAAGCAGCA
GTCCGGGTCATCATCGTCGGAGACGAGCTCGCCTCGATGCGTCGGAGAATCGGAGCCAGGAATCCGAAAAGCACAGGCTACGAGCAAGGAAGTGATCGAT
GTGGAAGAGATTGGGAAGGAGATTAAGAACGTGAAGAGGCAGAATTTCATAACGCACTGCCTTCTCTCTGCCTTGATCGTGGTCACTGTAGCTTGGCAAG
TCTCGGAGGTCTCTCTGGCTCTGTCGATCAAGGACAAACTGAGCCACCCGGTTAGATCCTTGGCAAGCGCCATCTTTGGAGGGGGGAGAAATCAAGGTCA
CGACAGAGATGGAGACCACGAGAGGAAAGATTCTGGTGCAGAAGCCAGTAATGGTTCAACTGTGATGATGCCGGGGCTTCCTCAAGTAGACTTCAGCTTC
AATAGTGATGACTGCTCTTAG
AA sequence
>Lus10037034 pacid=23171077 polypeptide=Lus10037034 locus=Lus10037034.g ID=Lus10037034.BGIv1.0 annot-version=v1.0
MEPTQKLQFLTEEIQRLIEEKKNREQEEAFGAADGNSIPLDHTDRPILSRLLSELESLKGDGTLKQQSGSSSSETSSPRCVGESEPGIRKAQATSKEVID
VEEIGKEIKNVKRQNFITHCLLSALIVVTVAWQVSEVSLALSIKDKLSHPVRSLASAIFGGGRNQGHDRDGDHERKDSGAEASNGSTVMMPGLPQVDFSF
NSDDCS

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G27300 unknown protein Lus10037034
[exp]
0 1
AT3G24050 GATA GATA1 GATA transcription factor 1 (.... Lus10011762
[exp]
4.9 0.8838
AT4G22920 ATNYE1, SGR1, S... non-yellowing 1 (.1) Lus10001194
[exp]
6.1 0.8897
AT2G32150 Haloacid dehalogenase-like hyd... Lus10010537
[exp]
7.3 0.8675
AT4G31410 Protein of unknown function (D... Lus10020151
[exp]
8.7 0.8861
AT1G45249 bZIP AtABF2, ATAREB1... ABSCISIC ACID RESPONSIVE ELEME... Lus10009755
[exp]
13.7 0.8479
AT5G39510 ZIG1, SGR4, ATV... SHOOT GRAVITROPSIM 4, VESICLE ... Lus10021624
[exp]
18.0 0.8862
AT3G28630 Protein of unknown function (D... Lus10015346
[exp]
18.7 0.8769
AT4G21865 unknown protein Lus10014471
[exp]
20.4 0.8676
AT3G54840 ARA6, AtRABF1, ... Ras-related small GTP-binding ... Lus10017462
[exp]
20.8 0.8818
AT1G22040 Galactose oxidase/kelch repeat... Lus10025357
[exp]
20.8 0.8874

Lus10037034 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.