Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27290 118 / 9e-35 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015767 [exp] 183 / 6e-60 AT1G27290 146 / 7e-46 unknown protein Lus10003121 [exp] 137 / 2e-41 AT1G27290 152 / 8e-48 unknown protein Lus10011352 [exp] 140 / 4e-39 AT1G67310 637 / 0.0 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G058100 [exp] 134 / 4e-41 AT1G27290 131 / 6e-40 unknown protein Potri.003G170300 [exp] 131 / 5e-40 AT1G27290 129 / 2e-39 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10037037 pacid=23171352 polypeptide=Lus10037037 locus=Lus10037037.g ID=Lus10037037.BGIv1.0 annot-version=v1.0 ATGATGAGAAGGCAGCAGGAGCAGCAGCAGCATCAAGATCAGTACTCTCGTGTTTTCTTCGAGCTATCTACTCTTGTCTTCAACTTGCTCCGTTCGCCGC CGACGACGATCCCCTTCGCTGACCAATTGGAGGCTACGGCGCCTACAGGCGCCGCCGGTTCCCCTTCTCCTTCTTCTTCGAGAATTAGGAGATCGCAGGC GGCGCAGATTACGCCGGCGGGATTCGCTTCGCTGCTATTGGGGGTGTCTCTGACGATGATGCTGTGTGGATCCGTGACTTTCTTTATCGGGTTCATGCTG ATGCCGTGGGTGCTTGGACTCGTAATGGTGTTCTACGTCGCCGGGATTGTGTCAATGATCTCCATGTTAGGGCGTTCGCTTTTTTGTTACGCCACCGGAC CTCCTCCTCCTCCTCTTCATCATCATACAAAGGAAGTTCCCGTTCATGGAGGAGTCGGTTCTGGATATGGTTGTGAATTGGGATAG
AA sequence Show only first row Show all	>Lus10037037 pacid=23171352 polypeptide=Lus10037037 locus=Lus10037037.g ID=Lus10037037.BGIv1.0 annot-version=v1.0 MMRRQQEQQQHQDQYSRVFFELSTLVFNLLRSPPTTIPFADQLEATAPTGAAGSPSPSSSRIRRSQAAQITPAGFASLLLGVSLTMMLCGSVTFFIGFML MPWVLGLVMVFYVAGIVSMISMLGRSLFCYATGPPPPPLHHHTKEVPVHGGVGSGYGCELG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G27290			unknown protein		Lus10037037 [exp]	0	1
AT1G27290			unknown protein		Lus10015767 [exp]	1.0	0.8901
AT5G14930		GENE101, SAG101	senescence-associated gene 101...		Lus10039472 [exp]	6.0	0.7908
AT2G15580			RING/U-box superfamily protein...		Lus10001688 [exp]	6.3	0.7809
AT3G27010	TCP	ATTCP20, PCF1, ...	ARABIDOPSIS THALIANA TEOSINTE ...		Lus10037046 [exp]	7.3	0.7839
AT3G62220			Protein kinase superfamily pro...		Lus10004524 [exp]	7.7	0.7873
AT4G28570			Long-chain fatty alcohol dehyd...		Lus10003621 [exp]	10.4	0.7719
AT4G31040			CemA-like proton extrusion pro...		Lus10040575 [exp]	11.2	0.7916
AT3G18430			Calcium-binding EF-hand family...		Lus10022173 [exp]	12.2	0.7899
AT2G15230		ATLIP1	lipase 1 (.1)		Lus10002809 [exp]	13.0	0.7753
AT3G16500	AUX_IAA	IAA26, PAP1	indole-3-acetic acid inducible...		Lus10006842 [exp]	14.5	0.7737

Compare expression of checked genes

Lus10037037 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.