Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003122 [exp] 74 / 8e-17 AT5G65070 65 / 5e-13 MADS AFFECTING FLOWERING 4, AGAMOUS-like 69, K-box region and MADS-box transcription factor family protein (.1.2.3)
Poplar homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01486 [flax] [poplar] K-box K-box region
Representative CDS sequence Show only first row Show all	>Lus10037038 pacid=23170995 polypeptide=Lus10037038 locus=Lus10037038.g ID=Lus10037038.BGIv1.0 annot-version=v1.0 ATGAGTGAGAACAGGGCATCTCCTATTGAGCTCAGAGCCTTCACCACATTCGTCTCCACCCCTCTCACTTTGGATGAGGAAGGAGGGGAAATTAGCGAGG ATGTTGAAGAGGAAGTCAATGATGAAGCTGCAGGAATCTCTCCAACTGCACTACTGCAAATTGTCCAGAGGTACTTTGTTGATCAAGATCCAGCTGACGA CCAACAGCTGACTGTGGATGAACTTGTACAGTTAGAATACCAACTTGGCATGGCACTAACTCAGATAAGAGCCAGGAAGACGCAACTGGAGTTGGAAACC TTAAAGACACTCCAGGAAAAGGAACTGGAGCTAAAACGGGAAAATGAGGCCCTGAAGGAACAGATTGCAGCAGCCGTGGATGGTGATGATGATAGCAACA CAGCTATAGGAACCATTAGAGGCTCTGATAGTTATTTGGGTGGACCTCCAACTCTACGGCTACTTCAATAG
AA sequence Show only first row Show all	>Lus10037038 pacid=23170995 polypeptide=Lus10037038 locus=Lus10037038.g ID=Lus10037038.BGIv1.0 annot-version=v1.0 MSENRASPIELRAFTTFVSTPLTLDEEGGEISEDVEEEVNDEAAGISPTALLQIVQRYFVDQDPADDQQLTVDELVQLEYQLGMALTQIRARKTQLELET LKTLQEKELELKRENEALKEQIAAAVDGDDDSNTAIGTIRGSDSYLGGPPTLRLLQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G65060	MADS	FCL3, MAF3, AGL...	MADS AFFECTING FLOWERING 3, AG...		Lus10037038 [exp]	0	1
					Lus10013609 [exp]	1.0	0.7976
AT3G61040		CYP76C7	"cytochrome P450, family 76, s...		Lus10027425 [exp]	3.2	0.6583
AT1G52240		PIRF1, ATROPGEF...	phytochrome interacting RopGEF...		Lus10025794 [exp]	5.3	0.7340
AT5G65020		ANNAT2	annexin 2 (.1.2)		Lus10041696 [exp]	5.5	0.6932
AT4G21200		ATGA2OX8	ARABIDOPSIS THALIANA GIBBERELL...		Lus10012912 [exp]	29.8	0.7086
AT3G19270		CYP707A4	"cytochrome P450, family 707, ...		Lus10012675 [exp]	36.4	0.6899
AT2G24430	NAC	ANAC039, ANAC03...	Arabidopsis NAC domain contain...		Lus10020165 [exp]	36.6	0.6830
AT3G02570		PMI1, MEE31	PHOSPHOMANNOSE ISOMERASE 1, MA...		Lus10017603 [exp]	41.7	0.6475
AT3G07800			Thymidine kinase (.1)		Lus10006394 [exp]	65.2	0.6381
AT3G28345		MDR13, ABCB15	multi-drug resistance 13, ATP-...		Lus10012959 [exp]	90.5	0.6310

Compare expression of checked genes

Lus10037038 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.