Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10140 93 / 2e-25 MADS FLF, AGL25, FLC FLOWERING LOCUS F, FLOWERING LOCUS C, AGAMOUS-like 25, K-box region and MADS-box transcription factor family protein (.1.2.3.4) AT5G65070 90 / 7e-24 MADS FCL4, MAF4, AGL69 MADS AFFECTING FLOWERING 4, AGAMOUS-like 69, K-box region and MADS-box transcription factor family protein (.1.2.3) AT2G03710 89 / 7e-24 MADS AGL3, SEP4 SEPALLATA 4, AGAMOUS-like 3, K-box region and MADS-box transcription factor family protein (.1.2.3) AT4G09960 89 / 1e-23 MADS AGL11, STK SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) AT2G45650 90 / 2e-23 MADS AGL6 AGAMOUS-like 6 (.1) AT5G13790 90 / 2e-23 MADS AGL15 AGAMOUS-like 15 (.1) AT1G24260 89 / 2e-23 MADS AGL9, SEP3 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3) AT4G18960 89 / 5e-23 MADS AG AGAMOUS, K-box region and MADS-box transcription factor family protein (.1.2) AT4G37940 88 / 5e-23 MADS AGL21 AGAMOUS-like 21 (.1) AT3G57390 88 / 7e-23 MADS AGL18 AGAMOUS-like 18 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015766 [exp] 122 / 6e-38 AT5G10140 93 / 4e-25 FLOWERING LOCUS F, FLOWERING LOCUS C, AGAMOUS-like 25, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Lus10035029 [exp] 94 / 1e-26 AT5G10140 89 / 7e-24 FLOWERING LOCUS F, FLOWERING LOCUS C, AGAMOUS-like 25, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Lus10003123 [exp] 90 / 2e-25 AT5G10140 87 / 1e-23 FLOWERING LOCUS F, FLOWERING LOCUS C, AGAMOUS-like 25, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Lus10034370 [exp] 92 / 1e-24 AT1G69120 224 / 1e-73 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1) Lus10005081 [exp] 92 / 3e-24 AT1G69120 223 / 1e-72 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1) Lus10020477 [exp] 89 / 3e-24 AT4G37940 195 / 4e-64 AGAMOUS-like 21 (.1) Lus10028214 [exp] 86 / 4e-24 AT2G14210 117 / 1e-34 ARABIDOPSIS NITRATE REGULATED 1, AGAMOUS-like 44 (.1) Lus10012545 [exp] 87 / 5e-24 AT3G61120 92 / 1e-24 AGAMOUS-like 13 (.1) Lus10011349 [exp] 87 / 8e-24 AT5G15800 125 / 3e-37 SEPALLATA1, AGAMOUS-like 2, K-box region and MADS-box transcription factor family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G058200 [exp] 97 / 1e-26 AT2G03710 156 / 3e-48 SEPALLATA 4, AGAMOUS-like 3, K-box region and MADS-box transcription factor family protein (.1.2.3) Potri.003G170200 [exp] 96 / 3e-26 AT5G65050 134 / 8e-40 MADS AFFECTING FLOWERING 2, AGAMOUS-like 31 (.1.2.3) Potri.003G169850 [exp] 96 / 4e-26 AT2G45650 143 / 5e-42 AGAMOUS-like 6 (.1) Potri.003G169700 [exp] 94 / 1e-25 AT5G65070 137 / 1e-40 MADS AFFECTING FLOWERING 4, AGAMOUS-like 69, K-box region and MADS-box transcription factor family protein (.1.2.3) Potri.003G170000 [exp] 94 / 1e-25 AT5G65070 136 / 2e-40 MADS AFFECTING FLOWERING 4, AGAMOUS-like 69, K-box region and MADS-box transcription factor family protein (.1.2.3) Potri.006G048700 [exp] 92 / 1e-24 AT3G57390 219 / 2e-71 AGAMOUS-like 18 (.1.2) Potri.014G074100 [exp] 90 / 2e-23 AT2G45650 311 / 5e-108 AGAMOUS-like 6 (.1) Potri.012G132600 [exp] 89 / 2e-23 AT2G45650 182 / 3e-57 AGAMOUS-like 6 (.1) Potri.019G077200 [exp] 89 / 2e-23 AT4G09960 274 / 5e-94 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Potri.003G169600 [exp] 89 / 2e-23 AT1G24260 359 / 7e-127 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00319 [flax] [poplar] SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain)
Representative CDS sequence Show only first row Show all	>Lus10037039 pacid=23171116 polypeptide=Lus10037039 locus=Lus10037039.g ID=Lus10037039.BGIv1.0 annot-version=v1.0 ATGGGGAGGAGGAAGATGGAGCTGAAGCGAATCGAGGACAAGAGCAGCCGGCAAGTAAGCTTCTCGAAAAGGAGGAAAGGATTGATGAAAAAGGCAAGAG AGATCTCCATCCTCTGCGATGCCCAACTTGCCCTCCTCGTCTTCTCCTCACACGGCAAGCTCTACGAGTTCTCTAGCCACCACTCCAGGTGTCCCCTTTT TCACTCTGTTCATATATTCGAATTTGTTAATGTTGGTTCATGCACTGAATTTCGCTCTTAA
AA sequence Show only first row Show all	>Lus10037039 pacid=23171116 polypeptide=Lus10037039 locus=Lus10037039.g ID=Lus10037039.BGIv1.0 annot-version=v1.0 MGRRKMELKRIEDKSSRQVSFSKRRKGLMKKAREISILCDAQLALLVFSSHGKLYEFSSHHSRCPLFHSVHIFEFVNVGSCTEFRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G10140	MADS	FLF, AGL25, FLC	FLOWERING LOCUS F, FLOWERING L...		Lus10037039 [exp]	0	1
AT5G22580			Stress responsive A/B Barrel D...		Lus10009407 [exp]	7.0	0.8569
AT3G48670		RDM12, IDN2	RNA-DIRECTED DNA METHYLATION 1...		Lus10002305 [exp]	9.1	0.8541
AT3G53180		NodGS	nodulin/glutamine synthase-lik...		Lus10024005 [exp]	13.0	0.8245
					Lus10017219 [exp]	13.1	0.8307
AT5G17680			disease resistance protein (TI...		Lus10010221 [exp]	13.1	0.8501
AT5G23540			Mov34/MPN/PAD-1 family protein...		Lus10011717 [exp]	15.5	0.8300
AT1G68800	TCP	TCP12, BRC2, TC...	BRANCHED 2, TCP domain protein...		Lus10042962 [exp]	22.3	0.8339
AT1G69550			disease resistance protein (TI...		Lus10005376 [exp]	22.6	0.8159
AT5G21910			unknown protein		Lus10038069 [exp]	23.0	0.8437
					Lus10003893 [exp]	25.2	0.8434

Compare expression of checked genes

Lus10037039 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.