Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24260 323 / 3e-112 MADS AGL9, SEP3 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3) AT3G02310 262 / 2e-88 MADS AGL4, SEP2 SEPALLATA 2, AGAMOUS-like 4, K-box region and MADS-box transcription factor family protein (.1) AT5G15800 255 / 2e-85 MADS AGL2, SEP1 SEPALLATA1, AGAMOUS-like 2, K-box region and MADS-box transcription factor family protein (.1.2) AT2G03710 211 / 5e-69 MADS AGL3, SEP4 SEPALLATA 4, AGAMOUS-like 3, K-box region and MADS-box transcription factor family protein (.1.2.3) AT2G45650 186 / 3e-58 MADS AGL6 AGAMOUS-like 6 (.1) AT1G69120 176 / 2e-54 MADS AGL7, AP1 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1) AT1G26310 175 / 4e-54 MADS CAL1, AGL10, CAL CAULIFLOWER, AGAMOUS-like 10, K-box region and MADS-box transcription factor family protein (.1) AT5G60910 171 / 1e-52 MADS FUL, AGL8 FRUITFULL, AGAMOUS-like 8 (.1.2) AT3G61120 171 / 2e-52 MADS AGL13 AGAMOUS-like 13 (.1) AT4G09960 153 / 1e-45 MADS AGL11, STK SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015765 [exp] 448 / 1e-161 AT1G24260 347 / 5e-122 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3) Lus10003124 [exp] 394 / 7e-140 AT1G24260 355 / 6e-125 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3) Lus10003125 [exp] 304 / 9e-106 AT1G24260 290 / 9e-101 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3) Lus10011350 [exp] 276 / 1e-94 AT1G24260 234 / 3e-78 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3) Lus10005080 [exp] 274 / 7e-93 AT3G02310 372 / 1e-131 SEPALLATA 2, AGAMOUS-like 4, K-box region and MADS-box transcription factor family protein (.1) Lus10034371 [exp] 274 / 1e-92 AT3G02310 364 / 3e-128 SEPALLATA 2, AGAMOUS-like 4, K-box region and MADS-box transcription factor family protein (.1) Lus10034663 [exp] 236 / 1e-77 AT5G15800 267 / 4e-90 SEPALLATA1, AGAMOUS-like 2, K-box region and MADS-box transcription factor family protein (.1.2) Lus10004638 [exp] 211 / 3e-68 AT3G02310 246 / 2e-82 SEPALLATA 2, AGAMOUS-like 4, K-box region and MADS-box transcription factor family protein (.1) Lus10026678 [exp] 207 / 5e-67 AT5G15800 225 / 3e-74 SEPALLATA1, AGAMOUS-like 2, K-box region and MADS-box transcription factor family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G058400 [exp] 358 / 4e-126 AT1G24260 362 / 8e-128 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3) Potri.003G169600 [exp] 357 / 1e-125 AT1G24260 359 / 7e-127 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3) Potri.004G115500 [exp] 264 / 6e-89 AT3G02310 357 / 4e-126 SEPALLATA 2, AGAMOUS-like 4, K-box region and MADS-box transcription factor family protein (.1) Potri.017G099700 [exp] 260 / 2e-87 AT3G02310 372 / 8e-132 SEPALLATA 2, AGAMOUS-like 4, K-box region and MADS-box transcription factor family protein (.1) Potri.008G098400 [exp] 226 / 4e-74 AT5G15800 275 / 2e-93 SEPALLATA1, AGAMOUS-like 2, K-box region and MADS-box transcription factor family protein (.1.2) Potri.014G074100 [exp] 211 / 4e-68 AT2G45650 311 / 5e-108 AGAMOUS-like 6 (.1) Potri.015G134800 [exp] 182 / 9e-57 AT2G45650 209 / 2e-67 AGAMOUS-like 6 (.1) Potri.012G132600 [exp] 174 / 9e-54 AT2G45650 182 / 3e-57 AGAMOUS-like 6 (.1) Potri.012G062300 [exp] 171 / 8e-53 AT5G60910 288 / 5e-99 FRUITFULL, AGAMOUS-like 8 (.1.2) Potri.004G115400 [exp] 170 / 3e-52 AT5G60910 230 / 7e-76 FRUITFULL, AGAMOUS-like 8 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01486 [flax] [poplar] K-box K-box region PF00319 [flax] [poplar] SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain)
Representative CDS sequence Show only first row Show all	>Lus10037040 pacid=23171154 polypeptide=Lus10037040 locus=Lus10037040.g ID=Lus10037040.BGIv1.0 annot-version=v1.0 ATGGGGAGAGGTAGAGTGGAACTGAAGAGGATCGAAAACAAGATCAACAGACAAGTAACGTTTGCAAAGAGAAGGAATGGGCTGCTGAAGAAAGCTTATG AGCTTTCCGTGCTTTGTGATGCTGAGGTTGCTCTCATCATCTTCTCCAATAGGGGAAAACTGTACGAGTTTTGCAGTAGTTCAAGCAGCATGCTGAAAAC ATTGGAGAGGTACCAGAAATGCAACTATGGAGCACCTGAGTCCAATCAGATCTCAGCGAGGGAAGCCCTGGAGATAAGCAGCCAGCAGGAGTATCTGAAG CTGAAAGCACGCTATGAGGCCCTACAGAGGTCCCAAAGGAACTTGTTGGGAGAAGACCTCGGCCCTCTTAGCACGAAAGAGCTCGAGTCACTCGAAAGGC AGCTTGACATGTCTCTGAAGCAGATCCGATCAACTCGGACGCAATACATGTTGGATCAGCTCAATGATTTGCAGCGCAAGGAAAACTTGCTGAATGAAGC AAATAATAACTTGAAACAAAGGCTGATGGAAGGGTACCAGATAAACAATACGCTACAGCTGAATAGCGGTGCGGAAGAAGTTGATTACGGGAGACACCAA GCTCAGCAGCAGCAGCCACAGGGTGATCATGATCATCATCATGGATTCTTTCATCCATTGGACTGTGAACCATCTTTGCATATTGGATACCACCATGAGG AGCAGGATCCAACAATGACGGATTTAACAGTAGCAACAGCTGGGCCAAGTGCGAATAACTACATGCCAGGATGGCTTCCATGA
AA sequence Show only first row Show all	>Lus10037040 pacid=23171154 polypeptide=Lus10037040 locus=Lus10037040.g ID=Lus10037040.BGIv1.0 annot-version=v1.0 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSSMLKTLERYQKCNYGAPESNQISAREALEISSQQEYLK LKARYEALQRSQRNLLGEDLGPLSTKELESLERQLDMSLKQIRSTRTQYMLDQLNDLQRKENLLNEANNNLKQRLMEGYQINNTLQLNSGAEEVDYGRHQ AQQQQPQGDHDHHHGFFHPLDCEPSLHIGYHHEEQDPTMTDLTVATAGPSANNYMPGWLP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G24260	MADS	AGL9, SEP3	SEPALLATA3, AGAMOUS-like 9, K-...		Lus10037040 [exp]	0	1
AT3G02310	MADS	AGL4, SEP2	SEPALLATA 2, AGAMOUS-like 4, K...		Lus10034371 [exp]	1.0	1.0000
AT5G37660		PDLP7	plasmodesmata-located protein ...		Lus10015952 [exp]	7.1	1.0000
AT2G39220		PLP6, PLAIIB ,P...	PATATIN-like protein 6 (.1)		Lus10024533 [exp]	8.7	1.0000
AT3G02310	MADS	AGL4, SEP2	SEPALLATA 2, AGAMOUS-like 4, K...		Lus10005080 [exp]	9.2	0.9995
AT1G69120	MADS	AGL7, AP1	APETALA1, AGAMOUS-like 7, K-bo...		Lus10004637 [exp]	9.6	0.9986
					Lus10038594 [exp]	10.0	1.0000
AT4G34440		AtPERK5	proline-rich extensin-like rec...		Lus10040467 [exp]	11.2	1.0000
AT2G29050		ATRBL1	RHOMBOID-like 1 (.1.2)		Lus10004965 [exp]	12.1	0.9634
AT3G51590		LTP12	lipid transfer protein 12 (.1)		Lus10004067 [exp]	12.2	1.0000
AT1G17930			Aminotransferase-like, plant m...		Lus10005482 [exp]	13.2	1.0000

Compare expression of checked genes

Lus10037040 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.