Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14090 126 / 9e-33 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G059100 [exp] 264 / 5e-85 AT5G14090 152 / 3e-42 unknown protein Potri.003G168700 [exp] 252 / 2e-80 AT5G14090 151 / 4e-42 unknown protein Potri.001G327500 [exp] 141 / 4e-38 AT5G14090 170 / 2e-49 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10037042 pacid=23171296 polypeptide=Lus10037042 locus=Lus10037042.g ID=Lus10037042.BGIv1.0 annot-version=v1.0 ATGCACCGCAAGTTGCGGCAGAATAGCAATGAACAACCTCTCAAGGATTTCTGCGTTGGGCAAGCCTACAATTGCCTTACGGCGCAGCCATCGATCGATG AGCAAGAGACGTTCCAAAAGAAAAACTATGGGAACAGAACATACATGCAGTTCTCCAGGGAGAATCTACTGGGTATGAAAGCTGAATTAGGAGAAGGAGA TGAAGAGTACTATGCAGATGAAATGTCAGAGCTTTTCCATGGATTCCTAGCCATTGGAACGCTTGGTTCCGACCCAACCGGCACCAATCCACCAGCAACA CCAACGTTTGCAATTGGGTTGGAGAACATCACGGAGCAAGAGACTGAGGATCATGAAGCAACTGAGAACGAGCTGAAACTGATCAATGATGAGCTTGAGA AGGTACTAATAGCTCAGGAAAGCAGCTGGAACAATGACATTTCAGCAAGAAACAGCCACGTGAGTGGAGGGAGAAGCAGCCAAGGGAGCACGATTACTCT GAGTGGAAAGGCATTGTTTGAAGGGAGAGAAAGCAATGCAGTTTGCCCTCTGCAAGAGTATCTGTTCGGGTCTGCAGTGGAGATTCCGGCAGAGACGACT ACTACTACTGTAAAGAAAGAGGGGAATAGGACTTCACTTGGGGAGCTGTTCCAGAGGAATAAGTTGGCTGAGGAGAATAATGGTGGTGGAGGGAAATGGG GGGAGATCGGTAGAGAAGACGAAAAGCGGAATCATGAGAAGGAAGGAGAGAAGAAGCTTCTCCATATCCAGCTGATGAAGAAGATGCTTAAGAAGAAACT TCTCCATGCTTGTTCCAAGAATTCCAATGATTCCTCTGATTATGGAAATCCAGCTGAGACCAAACTGCACAAGATCAAGCGAATGTTTTACAGGAAAGTT CATCCGGAGAATCTAGAACCAGGACAGGCAACACCAGCTGGGAAGAAAGGAACCAAATCCGAGAAGAACAAGGAGAAAAAGAACAAGAAGAAGGGGCAGA ACATGAATGAAGGAGGAGAGAGGAATGGGAATGGAGTTCGAGGGAGTCAACCAAATCCAGTGGAGTTTGGTATGGACGACTTCGACTCCAACGGGAGCCG GGAATGCTGGATCAAGACAGATGCACAGTGTATGTATATGCTATACTTGGTCTCTAATTACTGA
AA sequence Show only first row Show all	>Lus10037042 pacid=23171296 polypeptide=Lus10037042 locus=Lus10037042.g ID=Lus10037042.BGIv1.0 annot-version=v1.0 MHRKLRQNSNEQPLKDFCVGQAYNCLTAQPSIDEQETFQKKNYGNRTYMQFSRENLLGMKAELGEGDEEYYADEMSELFHGFLAIGTLGSDPTGTNPPAT PTFAIGLENITEQETEDHEATENELKLINDELEKVLIAQESSWNNDISARNSHVSGGRSSQGSTITLSGKALFEGRESNAVCPLQEYLFGSAVEIPAETT TTTVKKEGNRTSLGELFQRNKLAEENNGGGGKWGEIGREDEKRNHEKEGEKKLLHIQLMKKMLKKKLLHACSKNSNDSSDYGNPAETKLHKIKRMFYRKV HPENLEPGQATPAGKKGTKSEKNKEKKNKKKGQNMNEGGERNGNGVRGSQPNPVEFGMDDFDSNGSRECWIKTDAQCMYMLYLVSNY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14090			unknown protein		Lus10037042 [exp]	0	1
AT1G27990			unknown protein		Lus10015763 [exp]	1.0	0.9553
AT4G19510			Disease resistance protein (TI...		Lus10008209 [exp]	1.4	0.9552
AT5G22580			Stress responsive A/B Barrel D...		Lus10009407 [exp]	2.4	0.9401
AT5G59320		LTP3	lipid transfer protein 3 (.1)		Lus10024201 [exp]	2.8	0.9400
AT1G69240		RHS9, ATMES15	ROOT HAIR SPECIFIC 9, ARABIDOP...		Lus10037068 [exp]	9.7	0.8223
AT5G21910			unknown protein		Lus10038069 [exp]	11.2	0.9193
AT2G39440			unknown protein		Lus10018300 [exp]	11.2	0.9297
AT2G39440			unknown protein		Lus10040607 [exp]	11.5	0.9183
AT1G13570			F-box/RNI-like superfamily pro...		Lus10004851 [exp]	11.7	0.7981
AT3G15010			RNA-binding (RRM/RBD/RNP motif...		Lus10021035 [exp]	12.0	0.9008

Compare expression of checked genes

Lus10037042 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.