Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27990 275 / 1e-92 unknown protein AT5G52420 112 / 1e-29 unknown protein AT5G23920 85 / 2e-19 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015763 [exp] 423 / 2e-151 AT1G27990 302 / 5e-104 unknown protein Lus10039248 [exp] 109 / 2e-28 AT5G52420 212 / 8e-69 unknown protein Lus10039249 [exp] 97 / 2e-24 AT5G52420 160 / 2e-49 unknown protein Lus10027495 [exp] 94 / 6e-23 AT5G52420 159 / 8e-49 unknown protein Lus10027493 [exp] 45 / 4e-06 AT5G52420 52 / 4e-09 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G168400 [exp] 315 / 9e-108 AT1G27990 318 / 5e-109 unknown protein Potri.001G059500 [exp] 301 / 3e-103 AT1G27990 308 / 7e-106 unknown protein Potri.015G146400 [exp] 125 / 2e-34 AT5G52420 259 / 3e-87 unknown protein Potri.012G143300 [exp] 70 / 3e-14 AT5G52420 126 / 3e-36 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10037043 pacid=23171180 polypeptide=Lus10037043 locus=Lus10037043.g ID=Lus10037043.BGIv1.0 annot-version=v1.0 ATGTCAGGGGTATCTCTGGCGGTGGGGGCAGGGGAAACAACACCACCCCTGCAAAATCAACAGACGAATACGATGATGGGAGGAATAATGGGATCTCTTC GTATAATAGAGCTGCAATTAGTAGCCTTCATAATGGTATTCTCACTCAGCGGCCTTGTCCCTCTCCTCGACTTGGTCTTCCCTTTCTTCGTCTCTGCTTA CCTCCTCGCCCTTTCCCGCCTCGCCTTCCCTTCCTCCGGCAGATTGGGGTCCACGTCATCCTCCTCGGAAACGACGATATTTCACGGGAGCCGGATGTTC AGGGCGTACGTCATCCTGGGGACCACCGTCGGATTGTTTCTTCCTCTGGCGTATGTACTTGGCGGTTTCGCCAGGGGAGACAATAGCGCCGTGAAATCCG CGACCCCTCATTTGTTCTTGCTATCGTGTCAGATCCTTACCGAGAATTTGGTCGGTGGGTTGGGGTTGTTCTCGCCGCCGGTCAGGGCGCTGGTTCCGTT GATGTATACTGTCAGGAGGGTGTTTGTGATTCTTGATTGGATTCACGACGTTTGGATCGACAAGACTCTCGCCCAGGATGCCGATTTCGCGGAGGTGGGT TGGTATTGGTTCGGGAAGGGGTTGGCGGTAGCGAACATGGGATATTTCTCAACGAACCTGCTCTGCTTTCTGATCCCACGGTTTCTGCCGAGAGCATTTG AGAAGTATTTCAATGAGATGAGGGATCAAGAGATCCACTCCAAGATGGCAGAGGATAAGCGATCCAGCAGCAAACTATCTCAACAGCCGCCGGAGAAGAA GGCCGATTAG
AA sequence Show only first row Show all	>Lus10037043 pacid=23171180 polypeptide=Lus10037043 locus=Lus10037043.g ID=Lus10037043.BGIv1.0 annot-version=v1.0 MSGVSLAVGAGETTPPLQNQQTNTMMGGIMGSLRIIELQLVAFIMVFSLSGLVPLLDLVFPFFVSAYLLALSRLAFPSSGRLGSTSSSSETTIFHGSRMF RAYVILGTTVGLFLPLAYVLGGFARGDNSAVKSATPHLFLLSCQILTENLVGGLGLFSPPVRALVPLMYTVRRVFVILDWIHDVWIDKTLAQDADFAEVG WYWFGKGLAVANMGYFSTNLLCFLIPRFLPRAFEKYFNEMRDQEIHSKMAEDKRSSSKLSQQPPEKKAD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G27990			unknown protein		Lus10037043 [exp]	0	1
AT5G48170		SNE, SLY2	SNEEZY, SLEEPY2, F-box family ...		Lus10001745 [exp]	1.0	0.9418
AT1G73830	bHLH	bHLH050, BEE3	BR enhanced expression 3 (.1.2...		Lus10009673 [exp]	2.0	0.7959
AT1G73830	bHLH	bHLH050, BEE3	BR enhanced expression 3 (.1.2...		Lus10009034 [exp]	3.5	0.7923
AT4G17370			Oxidoreductase family protein ...		Lus10028967 [exp]	7.4	0.7378
AT1G52240		PIRF1, ATROPGEF...	phytochrome interacting RopGEF...		Lus10025794 [exp]	8.1	0.7375
AT2G46150			Late embryogenesis abundant (L...		Lus10027178 [exp]	8.4	0.7327
AT4G18450	AP2_ERF		Integrase-type DNA-binding sup...		Lus10005281 [exp]	9.8	0.6729
AT1G80520			Sterile alpha motif (SAM) doma...		Lus10024059 [exp]	11.0	0.7570
AT2G39980			HXXXD-type acyl-transferase fa...		Lus10028267 [exp]	14.9	0.7068
AT1G62280		SLAH1	SLAC1 homologue 1 (.1)		Lus10031545 [exp]	18.4	0.6986

Compare expression of checked genes

Lus10037043 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.