Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02960 129 / 1e-36 Heavy metal transport/detoxification superfamily protein (.1) AT5G50740 100 / 4e-25 Heavy metal transport/detoxification superfamily protein (.1.2.3.4) AT5G63530 91 / 2e-21 ATFP3 ARABIDOPSIS THALIANA FARNESYLATED PROTEIN 3, farnesylated protein 3 (.1.2) AT5G24580 65 / 3e-12 Heavy metal transport/detoxification superfamily protein (.1.2.3) AT5G03380 63 / 2e-11 Heavy metal transport/detoxification superfamily protein (.1.2) AT5G60800 61 / 9e-11 Heavy metal transport/detoxification superfamily protein (.1.2) AT2G28090 56 / 2e-09 Heavy metal transport/detoxification superfamily protein (.1) AT4G35060 52 / 1e-08 HIPP25 heavy metal associated isoprenylated plant protein 25, Heavy metal transport/detoxification superfamily protein (.1) AT2G18196 50 / 1e-07 Heavy metal transport/detoxification superfamily protein (.1) AT4G38580 50 / 1e-07 HIPP26, ATFP6 HEAVY METAL ASSOCIATED ISOPRENYLATED PLANT PROTEIN 26, farnesylated protein 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015762 [exp] 344 / 2e-121 AT3G02960 151 / 3e-45 Heavy metal transport/detoxification superfamily protein (.1) Lus10012867 [exp] 86 / 5e-19 AT2G40770 1843 / 0.0 zinc ion binding;DNA binding;helicases;ATP binding;nucleic acid binding (.1) Lus10038785 [exp] 80 / 7e-18 AT5G50740 183 / 6e-57 Heavy metal transport/detoxification superfamily protein (.1.2.3.4) Lus10039074 [exp] 80 / 9e-18 AT5G50740 182 / 8e-57 Heavy metal transport/detoxification superfamily protein (.1.2.3.4) Lus10030514 [exp] 76 / 6e-16 AT5G50740 221 / 1e-70 Heavy metal transport/detoxification superfamily protein (.1.2.3.4) Lus10016133 [exp] 67 / 1e-12 AT5G60800 175 / 3e-52 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10021432 [exp] 66 / 1e-12 AT5G60800 158 / 1e-46 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10021516 [exp] 62 / 5e-11 AT5G03380 202 / 2e-61 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10015583 [exp] 61 / 6e-11 AT5G24580 314 / 6e-107 Heavy metal transport/detoxification superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G017600 [exp] 125 / 1e-35 AT3G02960 199 / 2e-64 Heavy metal transport/detoxification superfamily protein (.1) Potri.016G006600 [exp] 100 / 2e-25 AT5G50740 153 / 5e-45 Heavy metal transport/detoxification superfamily protein (.1.2.3.4) Potri.006G006100 [exp] 95 / 2e-23 AT5G50740 143 / 2e-41 Heavy metal transport/detoxification superfamily protein (.1.2.3.4) Potri.015G099500 [exp] 92 / 7e-22 AT5G50740 214 / 7e-68 Heavy metal transport/detoxification superfamily protein (.1.2.3.4) Potri.012G101400 [exp] 90 / 5e-21 AT5G63530 204 / 2e-63 ARABIDOPSIS THALIANA FARNESYLATED PROTEIN 3, farnesylated protein 3 (.1.2) Potri.004G214700 [exp] 77 / 2e-16 AT5G60800 142 / 7e-40 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.009G007600 [exp] 75 / 9e-16 AT5G60800 157 / 1e-45 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.012G007300 [exp] 59 / 4e-10 AT5G24580 251 / 5e-82 Heavy metal transport/detoxification superfamily protein (.1.2.3) Potri.016G093100 [exp] 57 / 2e-09 AT2G36950 123 / 5e-32 Heavy metal transport/detoxification superfamily protein (.1) Potri.004G175400 [exp] 50 / 9e-08 AT4G38580 254 / 2e-88 HEAVY METAL ASSOCIATED ISOPRENYLATED PLANT PROTEIN 26, farnesylated protein 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00403 [flax] [poplar] HMA Heavy-metal-associated domain
Representative CDS sequence Show only first row Show all	>Lus10037044 pacid=23171215 polypeptide=Lus10037044 locus=Lus10037044.g ID=Lus10037044.BGIv1.0 annot-version=v1.0 ATGGCAAAGGGAGATGTCATCTTCAAGGCTCTTATTCACTGCGATGGATGCGTCACAAAGATCAATAAATCCCTATCAGGATTTGGCGGGGTGGAAGATG TTTCGATCGAGAGGGAGAATGACATAGTAGTAGCCAACGGGATTAACCTCGACCCATTGAAGTTGCTAGCCAGGCTACAAAGCAAGTACAGTCGAAATGT CGAGTTGATTTCACCTATACCCAAACCCAAGCCCCAAATCTCAGACAATAAACAGCCACCATCAAAGCCTGAGTCGAAGATAAAGACACTGGTTCTTAGA GTGTTGATGTTCTGCCAAGGATGTGCAGACGACATCGAGAGAACGGTGGGGAAGATACAAGGAGTGGTGAGTGTGGAAGCAGAGATGGAGAGTTCGACGA CAGTGGTGATTGGGTTCTTTGATGCAGAGAGATTGGTTGAGAAGGTGAGGACGCAATTAACGAAAAAAGTTGAGGTTTTGAAATTAGTTGAAGAATCATC TAAGGGAAAGGTGAGGCTAAAGTGGAGAAACCTCCTCCTTCTGCACCTCCAGCTCCAGATGCAGTATGTTTGCTTTTGTACTGCTCATCCGCATCAACCT TTTCTAACCAGGGGATCGGAAGGGGGCATCCATCTGTCGCTCGTTTTTAACGACGACAATGTATTTGCTTGCTCAATCATGTGA
AA sequence Show only first row Show all	>Lus10037044 pacid=23171215 polypeptide=Lus10037044 locus=Lus10037044.g ID=Lus10037044.BGIv1.0 annot-version=v1.0 MAKGDVIFKALIHCDGCVTKINKSLSGFGGVEDVSIERENDIVVANGINLDPLKLLARLQSKYSRNVELISPIPKPKPQISDNKQPPSKPESKIKTLVLR VLMFCQGCADDIERTVGKIQGVVSVEAEMESSTTVVIGFFDAERLVEKVRTQLTKKVEVLKLVEESSKGKVRLKWRNLLLLHLQLQMQYVCFCTAHPHQP FLTRGSEGGIHLSLVFNDDNVFACSIM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02960			Heavy metal transport/detoxifi...		Lus10037044 [exp]	0	1

Compare expression of checked genes

Lus10037044 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.