Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13100 472 / 9e-168 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015761 [exp] 716 / 0 AT5G13100 466 / 2e-165 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G168300 [exp] 524 / 0 AT5G13100 481 / 1e-171 unknown protein Potri.001G059700 [exp] 499 / 1e-178 AT5G13100 478 / 1e-170 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10037045 pacid=23171113 polypeptide=Lus10037045 locus=Lus10037045.g ID=Lus10037045.BGIv1.0 annot-version=v1.0 ATGGGGGGAAAGTTGTTATGTGATTCCACCGCCGTCGGGGAGACCACATTTGACACTTCTTCATCGGTCGTCCTTTGGAGAGACCCCAACGCCGCCGGCG CTGTGGATCTAGGCGACCAGACCATTTCTTCCGCGACAACCACCGTTACCGGCGGCTGGGACAACGTGATTGGCCTCGAGGACCAACAGAGGCGCCATTT GAAGCGCCTGCACGCGAAGGGTGTCCTCTGGAAGCTCCCCGACGCCGACGACGAGGACAGCGCCTCCGGATCCCCATGCCTGCCGCACAGATCTATGGTG TTCCGGCTCACACACGGCGGCGTGGTTTCGTCCGACGGTAACTGCCTCTTCACCGCGTCGCAGAGGGCGATGGGTGCTGCGCGTGACATCGACGCGCGGG AGCTCCGACGGCGGACGGTTCTTCGATTCTTGGAGGACTTTGGATCCGCCGCCGAGGAAGAGAAGGGCGTGATTAACGATGCGATTCGGCACATGTACTC GCCGGATCTAAAGAATGGGTGGGGGATTCACATCGTTCAGGAGGTGAAGCTCTTGGCCAAGAAAGAAGACCGCGCCGCTCTCGATTCTGGGATCGATGAA CTCCTCCAGCTCGGGATGCAAAGACCGCTGGCGGCTGAGTCGATTTACAAGGAGAGGTGTATTCCGGTGGATGATGGTCCGAGTTGGGCGAAGTACATGG CGATCTCTGGTTCACCTGAGGATGAACACGATATCATCACCTTGCAATATACGGATGAAGGTTTGTTATCCGTAGAAGAGAACAGAGAAGGCCATGCCGC TGCTTTTGGTGATGATATAGCAATCGAGTGTCTTGCCACCGAGTTCAAGCGCGAGATCTATGTGGTTCAAGCACATGGAGCTGATGCAATGGTTGATGAA GAAAATTGTGTGTTCTTCCTGCCACACCGGCCAAGGAGTGAAATTTGTCAGCCTCCCTTTTTTCTGTTCATGAAAGGAACAGGATGGTCGGTAGCCGGAG CTGATCACTATGAACCACTGATAGCCCATCCATCTGCGGTAGTTTCGCAAGAGAAAGTTGCCTTGGTACTTTGA
AA sequence Show only first row Show all	>Lus10037045 pacid=23171113 polypeptide=Lus10037045 locus=Lus10037045.g ID=Lus10037045.BGIv1.0 annot-version=v1.0 MGGKLLCDSTAVGETTFDTSSSVVLWRDPNAAGAVDLGDQTISSATTTVTGGWDNVIGLEDQQRRHLKRLHAKGVLWKLPDADDEDSASGSPCLPHRSMV FRLTHGGVVSSDGNCLFTASQRAMGAARDIDARELRRRTVLRFLEDFGSAAEEEKGVINDAIRHMYSPDLKNGWGIHIVQEVKLLAKKEDRAALDSGIDE LLQLGMQRPLAAESIYKERCIPVDDGPSWAKYMAISGSPEDEHDIITLQYTDEGLLSVEENREGHAAAFGDDIAIECLATEFKREIYVVQAHGADAMVDE ENCVFFLPHRPRSEICQPPFFLFMKGTGWSVAGADHYEPLIAHPSAVVSQEKVALVL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13100			unknown protein		Lus10037045 [exp]	0	1
AT3G22960		PKP-ALPHA, PKP1	PLASTIDIAL PYRUVATE KINASE 1, ...		Lus10039396 [exp]	3.2	0.8940
AT4G24175			unknown protein		Lus10017264 [exp]	9.7	0.8835
AT1G77590		LACS9	long chain acyl-CoA synthetase...		Lus10042707 [exp]	14.1	0.8619
AT5G62350			Plant invertase/pectin methyle...		Lus10027198 [exp]	14.3	0.8395
AT2G38040		CAC3	acetyl Co-enzyme a carboxylase...		Lus10021126 [exp]	19.4	0.8713
AT5G14800		EMB2772, AT-P5C...	EMBRYO DEFECTIVE 2772, pyrroli...		Lus10034453 [exp]	19.5	0.8101
AT1G61580		RPL3B, ARP2	ARABIDOPSIS RIBOSOMAL PROTEIN ...		Lus10037360 [exp]	28.6	0.8738
AT3G25860		PLE2, LTA2	PLASTID E2 SUBUNIT OF PYRUVATE...		Lus10041467 [exp]	39.6	0.8538
AT1G17880		ATBTF3	basic transcription factor 3 (...		Lus10027180 [exp]	40.7	0.8620
AT5G12260			unknown protein		Lus10036072 [exp]	46.2	0.8406

Compare expression of checked genes

Lus10037045 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.