Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35450 447 / 1e-158 catalytics;hydrolases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015759 [exp] 281 / 2e-94 AT2G35450 207 / 9e-66 catalytics;hydrolases (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G167600 [exp] 481 / 8e-172 AT2G35450 468 / 1e-166 catalytics;hydrolases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0034 [flax] [poplar] Amidohydrolase PF04909 [flax] [poplar] Amidohydro_2 Amidohydrolase
Representative CDS sequence Show only first row Show all	>Lus10037047 pacid=23171299 polypeptide=Lus10037047 locus=Lus10037047.g ID=Lus10037047.BGIv1.0 annot-version=v1.0 ATGGCAAGCAGGCTCCTTTCTGTTTCAGCTGCAGCAGCACTCCCTCGTCGTCATCGCCATTCATGGCTTCCCTTTTCTCGTAGTCCATCAAAAATTCAAG TTTTTCGAGCTCCAGCTGCTGCGATGAGTTCTAACACTGAGACCGAAAGTGGAAGCACAACACTCTCTTCTAAGATCATCGATTCACATCTCCACGTTTG GGCATCTCCTGAAGAGGCTGCAGATAAATACCCTTATTTTCCTGGCCAAGAACCCACTTTGCCTGGAAATGTAGATTTCCTCCTCCGGTGCATGGAAGAA GCTGGTGTGGAGGGCGCCCTCATTGTGCAGCCTATTAATCACAAATTTGATCATTCCTTACTCACTAGTGTTTTGAAGAAGTATCCCGCCAAGTTTGTAG GCTGCTGCCTTGCAAACCCTGCAGAAGATAGAAATGGAATCAAGCAGCTTGAGCAGCTTATTGTAGAGGATGGTTATCGTGCTGTGCGGTTTAATCCGTA TCTGTGGCCTTCTGGTGAAAAGATGACAAATGAAGTTGGGAAGCGGTTGTTTTGTCGGGCTGGCGAACTTGGAGTACCTGTTGGGTTCATGTGCTTTAAG GGTCTTAATCTCCATATTTCAGAAATTGAACAACTGTGCACTGAGTTTCCTTCCACGCCAGTATTGATAGACCATTTGGGTTTCTGCAAACTTCCAATAA ACGATGAAGAAAAAGTCGCCTTCTCAAATCTTTTGAACCTCTCCAGGTTCCCACAGGTGTACGTGAAATTCAGTGCCCTTTTCAGAGTGTCGAGAGTTCA GCATCCGTATGATGATTTATCGCACCTTTTGTCCCAAGTTGTATCCAGATTTGGTGCCAACCGTATCATGTGGGGAAGCGATTTCCCGTTCGTGATTCCG GAATGTGGATACAATGGAGCTAAGGAAGCAGTGAACTACATAGCCAGTCGAGTGGAGTTGTCAGATACAGAGAAAGAATGGGTCATGGGTAAAACAGTAA TGCACGTTTTCCAGGGTCAATGGCTTTGA
AA sequence Show only first row Show all	>Lus10037047 pacid=23171299 polypeptide=Lus10037047 locus=Lus10037047.g ID=Lus10037047.BGIv1.0 annot-version=v1.0 MASRLLSVSAAAALPRRHRHSWLPFSRSPSKIQVFRAPAAAMSSNTETESGSTTLSSKIIDSHLHVWASPEEAADKYPYFPGQEPTLPGNVDFLLRCMEE AGVEGALIVQPINHKFDHSLLTSVLKKYPAKFVGCCLANPAEDRNGIKQLEQLIVEDGYRAVRFNPYLWPSGEKMTNEVGKRLFCRAGELGVPVGFMCFK GLNLHISEIEQLCTEFPSTPVLIDHLGFCKLPINDEEKVAFSNLLNLSRFPQVYVKFSALFRVSRVQHPYDDLSHLLSQVVSRFGANRIMWGSDFPFVIP ECGYNGAKEAVNYIASRVELSDTEKEWVMGKTVMHVFQGQWL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G35450			catalytics;hydrolases (.1)		Lus10037047 [exp]	0	1
AT5G13410			FKBP-like peptidyl-prolyl cis-...		Lus10009828 [exp]	1.4	0.9135
AT5G16140			Peptidyl-tRNA hydrolase family...		Lus10031901 [exp]	8.1	0.8972
AT1G29510		SAUR68	SMALL AUXIN UPREGULATED 68, SA...		Lus10020439 [exp]	10.6	0.8710
AT3G10405			unknown protein		Lus10037959 [exp]	12.4	0.9126
AT4G04900		RIC10	ROP-interactive CRIB motif-con...		Lus10007648 [exp]	12.6	0.8429
					Lus10024463 [exp]	16.3	0.8203
AT1G22630			unknown protein		Lus10018614 [exp]	21.7	0.8811
AT2G22870		EMB2001	embryo defective 2001, P-loop ...		Lus10011703 [exp]	22.9	0.7841
AT1G16445			S-adenosyl-L-methionine-depend...		Lus10031174 [exp]	24.7	0.8131
AT1G02160			Cox19 family protein (CHCH mot...		Lus10032273 [exp]	24.9	0.7778

Compare expression of checked genes

Lus10037047 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.