Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13150 414 / 3e-134 ATEXO70C1 exocyst subunit exo70 family protein C1 (.1) AT5G13990 318 / 3e-97 ATEXO70C2 exocyst subunit exo70 family protein C2 (.1) AT1G72470 223 / 9e-63 ATEXO70D1 exocyst subunit exo70 family protein D1 (.1) AT3G14090 222 / 1e-62 ATEXO70D3 exocyst subunit exo70 family protein D3 (.1) AT5G58430 218 / 4e-61 ATEXO70B1 exocyst subunit exo70 family protein B1 (.1) AT1G54090 214 / 9e-60 ATEXO70D2 exocyst subunit exo70 family protein D2 (.1) AT1G07000 213 / 1e-59 ATEXO70B2 exocyst subunit exo70 family protein B2 (.1) AT5G03540 194 / 2e-53 ATEXO70A1 exocyst subunit exo70 family protein A1 (.1.2.3) AT5G50380 195 / 1e-52 ATEXO70F1 exocyst subunit exo70 family protein F1 (.1) AT5G52340 182 / 1e-48 ATEXO70A2 exocyst subunit exo70 family protein A2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015757 [exp] 1043 / 0 AT5G13150 585 / 0.0 exocyst subunit exo70 family protein C1 (.1) Lus10011334 [exp] 573 / 0 AT5G13150 541 / 0.0 exocyst subunit exo70 family protein C1 (.1) Lus10003142 [exp] 566 / 0 AT5G13150 548 / 0.0 exocyst subunit exo70 family protein C1 (.1) Lus10041536 [exp] 355 / 3e-110 AT5G13990 608 / 0.0 exocyst subunit exo70 family protein C2 (.1) Lus10012555 [exp] 359 / 9e-110 AT5G13990 608 / 0.0 exocyst subunit exo70 family protein C2 (.1) Lus10015758 [exp] 268 / 1e-80 ND / Lus10013163 [exp] 231 / 1e-67 AT1G72470 740 / 0.0 exocyst subunit exo70 family protein D1 (.1) Lus10008126 [exp] 236 / 3e-67 AT1G72470 862 / 0.0 exocyst subunit exo70 family protein D1 (.1) Lus10022459 [exp] 207 / 1e-57 AT5G50380 749 / 0.0 exocyst subunit exo70 family protein F1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G060700 [exp] 513 / 2e-172 AT5G13150 658 / 0.0 exocyst subunit exo70 family protein C1 (.1) Potri.017G068000 [exp] 360 / 6e-113 AT5G13990 640 / 0.0 exocyst subunit exo70 family protein C2 (.1) Potri.001G325600 [exp] 349 / 8e-109 AT5G13990 662 / 0.0 exocyst subunit exo70 family protein C2 (.1) Potri.001G060300 [exp] 243 / 1e-71 ND / Potri.001G166400 [exp] 234 / 1e-66 AT1G72470 822 / 0.0 exocyst subunit exo70 family protein D1 (.1) Potri.003G068700 [exp] 233 / 2e-66 AT1G72470 810 / 0.0 exocyst subunit exo70 family protein D1 (.1) Potri.013G152900 [exp] 216 / 3e-60 AT5G58430 781 / 0.0 exocyst subunit exo70 family protein B1 (.1) Potri.019G124000 [exp] 211 / 2e-58 AT5G58430 726 / 0.0 exocyst subunit exo70 family protein B1 (.1) Potri.015G094800 [exp] 205 / 3e-56 AT5G50380 785 / 0.0 exocyst subunit exo70 family protein F1 (.1) Potri.010G241800 [exp] 202 / 2e-55 AT5G03540 988 / 0.0 exocyst subunit exo70 family protein A1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0034 [flax] [poplar] Amidohydrolase PF01979 [flax] [poplar] Amidohydro_1 Amidohydrolase family CL0295 [flax] [poplar] Vps51 PF03081 [flax] [poplar] Exo70 Exo70 exocyst complex subunit
Representative CDS sequence Show only first row Show all	>Lus10037048 pacid=23171234 polypeptide=Lus10037048 locus=Lus10037048.g ID=Lus10037048.BGIv1.0 annot-version=v1.0 ATGGAGGAGCGCCACCTCCCTGAAACCTCCGGGAGCTTATCCGTAACCTGCAACAACACAAACCCTAACTCATCCACCCTTGCCGAATCCCCTTCTTCCT GCAACCTAGAACAAGTAGATGGATTCCTGCAACTGCTCTCCCAGCCCGACACGGCACATAATAAATCCGATCCCCTCCGAGTTCCTGACGCTGTGGAGTT GTTGTTCAAATCTATCGAATCGTTCATCAACAAGTACGAAGATGCGAAATGCGGCTCCAAATTCGGCCAGGACGAGCACCAGGATTCCTCGCTTGTGGCA CATTTGAACCGTCTCTCCAATCTCGTCAAAATCCTCTCAACTACTTCCGAATCTGAGCTTGCATCAACATTCGACCGCGCCACCACGGTTCAGCACACGG CTATGTGTTTCCTTGACAACGAGCTTCGCACCGTTCTCGACGCCACCTTCAAACGCTCCTCCTCTGCCGGTGGTGCCGCTACTCCCAATTCCCCTGCATC GTCGCTGCCTTTCCGCCACGGCAATCTGCAGGAACAATCCCCTTCTTCTTCTTCTACTTCCAATCAACATCAGGAACCAGCAACACCAGCAGCGGCGGTT GATCAGCAATCAAATGGGGACGAAGATGATTTCCCCGGGTACCAGCCTGGAGACATCTGCAACATGAGCAGGATTGCGGCCTGCATGATTTCATCTGGTT ACCAAAGCGAGTGTTGCCTGCTGTACAGATCCATTAGGAGGACAGCGCTCAAGAACAAATTAGAGAAGCTCGGCCATGTGAATATAAGTGCTGAGGATAT CAACAGGATGGAATGGGAAACCCTAGAAGGTGAAATCGCTTCGATTATCGACATTATTAGGCGCTGCTCTTCCTTGCTCTTCTCAGCCGAGCGGAACCTC GGCAGCGCTGTTTTCGCCGATCATCCGTTCGTTTACGGGGACATCTTCGCAAATCTGGCTTCCTCGGTTATGGATCGCTTCTTCAATTTTGCGCAGGCCA TTACCTTAACCAAATGCTCCGCCGAGAAATTGTTTAAATTCCTCGACCTCTACGAGACGCTCCGTGATTTAGGTCCTGAAATTGAGAATCTATCTTCAAG CAAGAGCACAAGCAGTACTGGTGTGAAATCAGAGATGTACGAGACGATAATCCAAATAGGTGAAGCCGCGGTAAGCATGTTCAGCGATTTGGAGAACTCA ATCCGGCGAGACAACAGTCGAACGGCGGTGCCGAGTGGTACGGTACACCCTTTGACTCGATATACGATGAACTATCTGAAATACGCATGCGAGTACAAGG ACACTCTCGAGCAGGTCTTCCTGCACAAACAAAAAACAGAGGGTGCGTCCACTTGGGAGCAATCTACTACTACCGACGCCGACGGGGCTAACGAGGATGG AACCCCGAAAACGTCTCCATTTTCCGTCCAATTGAACATGGTGATGGACTTGCTAGACGAAAACCTAGAGATGAAATCCAATCTGTACAGAGATCCAGCT CTCCGGCACATTTTCATGATGAACAATGGTAGGTATATCTTGCAGAAGATCAAAAGCTCCCCTGAGATCCACGATATGATGGGGGCGACGTGGTGCCGTC GCCGATCGTCGGATCTCAGGAAGTACCATAAGGGATACACCAGGGAGACTTGGGGGAGAGTGTTACAGTGTTTAAGGCACGAAGGTGTGCAGATGCCGAG TTTGTTGTTCCCAAGACTAGGCTTCATCAACACTCACGTCCACACCTCGCAGCAGCTCGGCAGAGGGATAGCCGACGATGTTGATTTAGTAACTTGGTTG CACAATCGAATCTGGCCTTATGAATCCAGCATGACCGAACAAGATTCGTATATCTCTACTCTGCTCTGCAGAATCGAACTCATACACTCTGGAGTTACTT GCTTTGCTGAAGCAGGAGGGCAGCATGTTTCGGGAATGGCTCGAGCAGTTGACAAGCTTGGCTTACGAGCCTGCTTAACTCAGTCAGTCATGGACTCTGG TGAAGGATTACCCCCTTCTTGGGCCAATCGAACTACTGATGATTTTGATGAAATGTATCTAGCTTCTTTGATTAACAAAGGACGGGATATTCATGCAAAA GGAACGACAGATCCAACAGTTCTCCCAGCAGAAACAGTTCTTAGCATGGCAACCATAAATGGTGCCAAGACGGTACTTTGGGATGATGAGATAGGATCAC TGGAGGTTGGGAAAAAGGCTGACTTAATCGTGATCAATCCCAACTCTTGGTCTATGGTTCCGACGCATGACAGCATCTCCAGCCTTGTTTATAGCATGAG AAGTGAGAATAACGCTTCAGTAATGTGTAATGGCAAGTGGATTATGAAGGACAAGAAGATTGTGAATGTAGATGAGGGAGAAGTAATTGCGGCAGCGAAG GAAGCTTCTACAAAGCTATTGATCAGAGCACGTATCAGCTTACCAAACAGAATGAATGTCATCTGA
AA sequence Show only first row Show all	>Lus10037048 pacid=23171234 polypeptide=Lus10037048 locus=Lus10037048.g ID=Lus10037048.BGIv1.0 annot-version=v1.0 MEERHLPETSGSLSVTCNNTNPNSSTLAESPSSCNLEQVDGFLQLLSQPDTAHNKSDPLRVPDAVELLFKSIESFINKYEDAKCGSKFGQDEHQDSSLVA HLNRLSNLVKILSTTSESELASTFDRATTVQHTAMCFLDNELRTVLDATFKRSSSAGGAATPNSPASSLPFRHGNLQEQSPSSSSTSNQHQEPATPAAAV DQQSNGDEDDFPGYQPGDICNMSRIAACMISSGYQSECCLLYRSIRRTALKNKLEKLGHVNISAEDINRMEWETLEGEIASIIDIIRRCSSLLFSAERNL GSAVFADHPFVYGDIFANLASSVMDRFFNFAQAITLTKCSAEKLFKFLDLYETLRDLGPEIENLSSSKSTSSTGVKSEMYETIIQIGEAAVSMFSDLENS IRRDNSRTAVPSGTVHPLTRYTMNYLKYACEYKDTLEQVFLHKQKTEGASTWEQSTTTDADGANEDGTPKTSPFSVQLNMVMDLLDENLEMKSNLYRDPA LRHIFMMNNGRYILQKIKSSPEIHDMMGATWCRRRSSDLRKYHKGYTRETWGRVLQCLRHEGVQMPSLLFPRLGFINTHVHTSQQLGRGIADDVDLVTWL HNRIWPYESSMTEQDSYISTLLCRIELIHSGVTCFAEAGGQHVSGMARAVDKLGLRACLTQSVMDSGEGLPPSWANRTTDDFDEMYLASLINKGRDIHAK GTTDPTVLPAETVLSMATINGAKTVLWDDEIGSLEVGKKADLIVINPNSWSMVPTHDSISSLVYSMRSENNASVMCNGKWIMKDKKIVNVDEGEVIAAAK EASTKLLIRARISLPNRMNVI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13150		ATEXO70C1	exocyst subunit exo70 family p...		Lus10037048 [exp]	0	1
AT3G60330		AHA7	H\(+\)-ATPase 7, H\(+\)-ATPase...		Lus10042905 [exp]	1.4	0.9600
AT1G15200			protein-protein interaction re...		Lus10023800 [exp]	2.0	0.9561
AT3G19000			2-oxoglutarate (2OG) and Fe(II...		Lus10023850 [exp]	2.4	0.9529
AT2G16720	MYB	AtY49, AtMYB7	ARABIDOPSIS THALIANA MYB DOMAI...		Lus10028435 [exp]	2.8	0.9264
AT2G21150		XCT	XAP5 CIRCADIAN TIMEKEEPER, XAP...		Lus10012170 [exp]	3.5	0.9360
AT1G30140			unknown protein		Lus10024751 [exp]	4.0	0.9517
AT2G31730	bHLH		basic helix-loop-helix (bHLH) ...		Lus10041649 [exp]	5.0	0.9435
AT5G07950			unknown protein		Lus10034694 [exp]	5.2	0.9114
AT3G23100		XRCC4	homolog of human DNA ligase iv...		Lus10021220 [exp]	5.9	0.9067
AT2G39530			Uncharacterised protein family...		Lus10031303 [exp]	7.3	0.9240

Compare expression of checked genes

Lus10037048 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.