Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13160 260 / 5e-86 PBS1 avrPphB susceptible 1, Protein kinase superfamily protein (.1) AT5G18610 239 / 7e-77 Protein kinase superfamily protein (.1.2) AT3G07070 192 / 7e-60 Protein kinase superfamily protein (.1) AT5G02800 189 / 4e-59 CDL1 CDG1-like 1, Protein kinase superfamily protein (.1) AT3G24790 188 / 7e-59 Protein kinase superfamily protein (.1) AT4G13190 180 / 2e-55 Protein kinase superfamily protein (.1) AT1G20650 179 / 2e-55 ASG5 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1) AT3G20530 179 / 3e-55 Protein kinase superfamily protein (.1) AT1G07870 172 / 3e-52 Protein kinase superfamily protein (.1.2) AT1G76370 171 / 5e-52 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015756 [exp] 353 / 3e-122 AT5G13160 732 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Lus10033966 [exp] 238 / 1e-76 AT5G18610 805 / 0.0 Protein kinase superfamily protein (.1.2) Lus10012814 [exp] 233 / 1e-74 AT5G18610 807 / 0.0 Protein kinase superfamily protein (.1.2) Lus10036499 [exp] 207 / 7e-66 AT5G18610 575 / 0.0 Protein kinase superfamily protein (.1.2) Lus10041426 [exp] 206 / 2e-65 AT5G18610 582 / 0.0 Protein kinase superfamily protein (.1.2) Lus10023473 [exp] 194 / 8e-61 AT5G18610 568 / 0.0 Protein kinase superfamily protein (.1.2) Lus10040350 [exp] 191 / 2e-59 AT5G18610 569 / 0.0 Protein kinase superfamily protein (.1.2) Lus10019897 [exp] 188 / 1e-58 AT5G02800 533 / 0.0 CDG1-like 1, Protein kinase superfamily protein (.1) Lus10011866 [exp] 188 / 4e-58 AT3G07070 556 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G060800 [exp] 296 / 9e-100 AT5G13160 714 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Potri.003G166900 [exp] 290 / 3e-97 AT5G13160 745 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Potri.010G021500 [exp] 238 / 8e-77 AT5G18610 779 / 0.0 Protein kinase superfamily protein (.1.2) Potri.008G205700 [exp] 238 / 9e-77 AT5G18610 783 / 0.0 Protein kinase superfamily protein (.1.2) Potri.010G215100 [exp] 212 / 3e-68 AT5G18610 595 / 0.0 Protein kinase superfamily protein (.1.2) Potri.008G046500 [exp] 202 / 4e-64 AT5G18610 582 / 0.0 Protein kinase superfamily protein (.1.2) Potri.002G241600 [exp] 199 / 2e-62 AT3G07070 543 / 0.0 Protein kinase superfamily protein (.1) Potri.006G133300 [exp] 194 / 1e-60 AT5G02800 566 / 0.0 CDG1-like 1, Protein kinase superfamily protein (.1) Potri.001G421400 [exp] 188 / 1e-58 AT3G20530 587 / 0.0 Protein kinase superfamily protein (.1) Potri.011G137000 [exp] 179 / 5e-55 AT3G20530 555 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10037049 pacid=23171008 polypeptide=Lus10037049 locus=Lus10037049.g ID=Lus10037049.BGIv1.0 annot-version=v1.0 ATGGGTTGTTTCCCTTGTTTCGATTCCAGGGAAGAGGAGACCTTGAATCGAGATGAGAAGTCCGATGATCGGAAACCAACTTCCTTGCCCACTGCCGCCT CCAATATTTCCAAATTGTCTTCTGGATCTGAAAGGCTGAGAGCAAGAAGCCTTGGACTGTCCAAAAGGGAATTAACATCTCCCAAGGATGCACCCGCTGG CAATATTGCAGCTCAAACATTTACTTTCCGTGAGCTTGCAGCCGCAACTAAGAATTTTAGGCCTGAGTCTTTCTTAGGGGAAGGAGGATTCGGGCGTGTA TATAAAGGACGGCTTGAGAGTACTGGTCAGGTTGTTGCTGTGAAGCAATTAGATAGAAATGGGCTACAGGGTAATAGAGAATTTCTGGTGGAGGTTCTCA TGCTTAGCCTTTTACATCATCCGAATCTTGTGAGCCTTATTGGCTATTGTGCTGATGGTGATCAGCGGCTGCTTGTCTATGAGTTCATGCCGTTCGGATC TCTGGAAGATCATCTTCATGGTAACCACTTCAATCTGGAATTTATTTTAGAATTTACACTCATGACAATCAACTAG
AA sequence Show only first row Show all	>Lus10037049 pacid=23171008 polypeptide=Lus10037049 locus=Lus10037049.g ID=Lus10037049.BGIv1.0 annot-version=v1.0 MGCFPCFDSREEETLNRDEKSDDRKPTSLPTAASNISKLSSGSERLRARSLGLSKRELTSPKDAPAGNIAAQTFTFRELAAATKNFRPESFLGEGGFGRV YKGRLESTGQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVSLIGYCADGDQRLLVYEFMPFGSLEDHLHGNHFNLEFILEFTLMTIN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13160		PBS1	avrPphB susceptible 1, Protein...		Lus10037049 [exp]	0	1
AT1G18260		HRD3A, EBS5	EMS-mutagenized bri1 suppresso...		Lus10009042 [exp]	5.2	0.8284
AT3G02740			Eukaryotic aspartyl protease f...		Lus10041103 [exp]	8.5	0.7986
AT4G08180		ORP1C	OSBP(oxysterol binding protein...		Lus10028087 [exp]	11.3	0.7926
AT3G06720		IMPA1, IMPA-1, ...	importin alpha isoform 1 (.1.2...		Lus10010933 [exp]	11.6	0.8130
AT2G43160			ENTH/VHS family protein (.1.2....		Lus10026741 [exp]	12.2	0.8050
AT5G46630			Clathrin adaptor complexes med...		Lus10030961 [exp]	15.2	0.7950
AT1G59610		DRP2B, CF1, ADL...	Dynamin related protein 2B, dy...		Lus10007887 [exp]	15.4	0.8213
AT2G40730		CTEXP	cytoplasmic tRNA export protei...		Lus10029025 [exp]	18.2	0.7769
AT3G63460		EMB2221	transducin family protein / WD...		Lus10019752 [exp]	22.7	0.8029
AT2G17790		ZIP3, VPS35A	ZIG suppressor 3, VPS35 homolo...		Lus10041880 [exp]	23.2	0.7653

Compare expression of checked genes

Lus10037049 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.