Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22660 177 / 3e-54 rRNA processing protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036936 [exp] 360 / 7e-126 AT3G22660 281 / 1e-94 rRNA processing protein-related (.1) Lus10031698 [exp] 295 / 4e-100 AT3G22660 316 / 3e-108 rRNA processing protein-related (.1) Lus10031120 [exp] 250 / 5e-81 AT3G22660 289 / 9e-96 rRNA processing protein-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G131200 [exp] 233 / 9e-76 AT3G22660 300 / 5e-102 rRNA processing protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05890 [flax] [poplar] Ebp2 Eukaryotic rRNA processing protein EBP2
Representative CDS sequence Show only first row Show all	>Lus10037050 pacid=23152575 polypeptide=Lus10037050 locus=Lus10037050.g ID=Lus10037050.BGIv1.0 annot-version=v1.0 ATGGCGGCACCAAAATCAGTTTCAGATACGAAAGACGAGGAGCTAATAGAAGATAACGATGATATAGCATATGAAGATAACGAAGAATTCAGCGGTGATT CCTCGTCCGACTCAGATGAGGAAGCTGACGTGAAACTGGATGTCCCATCCAAGGACGCGATATTCAACAGAGACGGTCTCAACGACAAGCTCCAAGAGAT CAGCTGGCCGGATCATGCAGGTTGGGTCCACAAACTCTCCCTCGAGATCAACCAGGAGCAAGAAGTCGATGTGAACGACGACATCACTCGCGAGACGGCA TTCTATACGCAGGCATTGGAAGGCACGAGGAGGGCGTTTGAGAAGTTCGAGACTATGGGGCTACCCTTTTTAAGGCCTCCCGAGTACAACGCTGAAATTG GGACGAATCTCTCGAAGGAGGTTCAAGCGCAGAAGCAGAAGGAGCGAGCTTCGCAGAAGAAAGGAGAGATTGAGACCGTTAAGAAGTCGAGGAAGCAGAG TCAGGAAAGTGGGTTTGCTCCTGGTGAGAATGATGAGCTCGATTTGGATCTCGGAGAAGTGGGGAAGAAGCCGTCTGAGAAGTCGAACAAGCAACGTCCC GGGGTGGGTCCCGTGGACAGGTTGGGTGGCAAGGGGAGGAAGTCTTTGAAGAGCAAGCCGGATAAGAAGGTGATGAAGAGGGTCAGGAAAGACTCGAAAT TCGGGTTCGGTGGGAGGAAAGGGATGAAGAAGCAGAACACTGCTGATACTACCGATGATGGTTTCAAAGGGTGTAAGAAAACTGGCGCTGAAGGGAATAA GAGAAGGAAGCAGTGA
AA sequence Show only first row Show all	>Lus10037050 pacid=23152575 polypeptide=Lus10037050 locus=Lus10037050.g ID=Lus10037050.BGIv1.0 annot-version=v1.0 MAAPKSVSDTKDEELIEDNDDIAYEDNEEFSGDSSSDSDEEADVKLDVPSKDAIFNRDGLNDKLQEISWPDHAGWVHKLSLEINQEQEVDVNDDITRETA FYTQALEGTRRAFEKFETMGLPFLRPPEYNAEIGTNLSKEVQAQKQKERASQKKGEIETVKKSRKQSQESGFAPGENDELDLDLGEVGKKPSEKSNKQRP GVGPVDRLGGKGRKSLKSKPDKKVMKRVRKDSKFGFGGRKGMKKQNTADTTDDGFKGCKKTGAEGNKRRKQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G22660			rRNA processing protein-relate...		Lus10037050 [exp]	0	1
AT2G04630		NRPE6B, NRPB6B	RNA polymerase Rpb6 (.1)		Lus10015000 [exp]	1.0	0.9399
AT5G27400			S-adenosyl-L-methionine-depend...		Lus10015166 [exp]	2.0	0.9261
AT5G49210			unknown protein		Lus10037138 [exp]	2.6	0.8992
AT1G03330			Small nuclear ribonucleoprotei...		Lus10042686 [exp]	3.5	0.9153
AT4G28360			Ribosomal protein L22p/L17e fa...		Lus10037603 [exp]	3.5	0.9242
AT1G28410			unknown protein		Lus10015403 [exp]	7.2	0.8872
AT2G28910		CXIP4	CAX interacting protein 4 (.1)		Lus10004961 [exp]	7.9	0.8724
AT3G10530			Transducin/WD40 repeat-like su...		Lus10035742 [exp]	8.4	0.8932
AT5G56670			Ribosomal protein S30 family p...		Lus10017473 [exp]	9.2	0.9028
AT4G10100		CNX7, SIR5	"co-factor for nitrate, reduct...		Lus10030343 [exp]	10.2	0.8968

Compare expression of checked genes

Lus10037050 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.