Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47160 224 / 1e-73 RING/U-box superfamily protein (.1.2) AT5G01520 221 / 3e-72 AtAIRP2, AIRP2 ABA Insensitive RING Protein 2, RING/U-box superfamily protein (.1.2) AT5G58787 218 / 5e-71 RING/U-box superfamily protein (.1.2) AT1G13195 211 / 3e-68 RING/U-box superfamily protein (.1.2) AT1G24440 209 / 3e-67 RING/U-box superfamily protein (.1) AT5G37250 48 / 1e-06 RING/U-box superfamily protein (.1) AT5G37200 47 / 3e-06 RING/U-box superfamily protein (.1) AT5G01960 46 / 1e-05 RING/U-box superfamily protein (.1) AT5G37270 45 / 2e-05 RING/U-box superfamily protein (.1) AT5G37230 44 / 2e-05 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036934 [exp] 474 / 9e-172 AT3G47160 239 / 2e-79 RING/U-box superfamily protein (.1.2) Lus10006447 [exp] 388 / 6e-138 AT3G47160 233 / 5e-77 RING/U-box superfamily protein (.1.2) Lus10011390 [exp] 385 / 8e-137 AT3G47160 233 / 3e-77 RING/U-box superfamily protein (.1.2) Lus10004821 [exp] 233 / 5e-77 AT5G01520 387 / 5e-138 ABA Insensitive RING Protein 2, RING/U-box superfamily protein (.1.2) Lus10002491 [exp] 229 / 2e-75 AT5G01520 386 / 1e-137 ABA Insensitive RING Protein 2, RING/U-box superfamily protein (.1.2) Lus10006253 [exp] 220 / 2e-71 AT1G13195 336 / 4e-117 RING/U-box superfamily protein (.1.2) Lus10036937 [exp] 218 / 1e-70 AT1G24440 332 / 5e-116 RING/U-box superfamily protein (.1) Lus10001209 [exp] 215 / 6e-70 AT3G47160 369 / 9e-131 RING/U-box superfamily protein (.1.2) Lus10005859 [exp] 212 / 6e-69 AT3G47160 372 / 5e-132 RING/U-box superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G053000 [exp] 354 / 2e-124 AT1G13195 235 / 1e-77 RING/U-box superfamily protein (.1.2) Potri.012G093300 [exp] 251 / 1e-83 AT1G24440 312 / 4e-108 RING/U-box superfamily protein (.1) Potri.004G041200 [exp] 250 / 1e-83 AT3G47160 313 / 1e-108 RING/U-box superfamily protein (.1.2) Potri.011G050700 [exp] 243 / 6e-81 AT3G47160 311 / 5e-108 RING/U-box superfamily protein (.1.2) Potri.015G089800 [exp] 243 / 8e-81 AT1G24440 295 / 3e-101 RING/U-box superfamily protein (.1) Potri.009G045400 [exp] 236 / 4e-78 AT3G47160 381 / 1e-135 RING/U-box superfamily protein (.1.2) Potri.016G115300 [exp] 233 / 3e-77 AT5G01520 339 / 6e-119 ABA Insensitive RING Protein 2, RING/U-box superfamily protein (.1.2) Potri.008G181300 [exp] 229 / 2e-75 AT1G24440 352 / 1e-123 RING/U-box superfamily protein (.1) Potri.001G250800 [exp] 228 / 7e-75 AT3G47160 344 / 4e-121 RING/U-box superfamily protein (.1.2) Potri.006G099600 [exp] 227 / 2e-74 AT5G01520 324 / 4e-113 ABA Insensitive RING Protein 2, RING/U-box superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10037053 pacid=23152418 polypeptide=Lus10037053 locus=Lus10037053.g ID=Lus10037053.BGIv1.0 annot-version=v1.0 ATGTGGGAGAAACAGTCACACCGATCATCATCTTCTTCTCCATTCAGAGAATCCCTCAAATCCCTTGAAGCTGATATACAACATGCTAATACCTTGGCAG CTTCTTTACCTGGAGATTATGGTGGGGATTGTGTACAGATGAGGCTGTCATTCAGTCCTATTGCTCCTTACCTTCTGTTCTTGGTTGAATGGATGGATTA TAGTTGTACAGATGCGCTTCCTAATTACTTAGGCCTTCTCCATGTCCTTGTTTACAAAGTTTACATCGATGGAGTGCCGACATTGTCGTGTAAAGAAAGG AGGGCCAGTCTAAGGGAGTTCTATGCTATTCTATACCCTTCACTCAGGCAGCTTGAAGGCCAGTTTCCGGAATCAGACCATAAGAGAAGTAGAGGAGGTG AAGTTTTAACCACCAGGAAGCGAGCAGAAGAGAGGAGGAAACTAGCCGATAATGAATTTGAAAGAGACGATGAATGTGGGATATGCATGGAGACCGGTAG CAAGATGGTATTGCCCGACTGCGGCCACTCCTTGTGCATGAACTGCTTCCACGATTGGAACAATAGATCAAAGTCGTGCCCTTTTTGCCGCGGCAGCTTG AAGAGAGTGAGGTCTATAGACTTGTGGGTTCTAATTAGCAATGGAGATATAGTTGATGCAGCAACTCTGGCAGAAGAGAACCTTAGGCGTTTCTACCTTT ATGTTGAGAACTTGTCCCTTGTAATGCCTGAGATCTCAGGTCATGCCATTCTGTTTGATTATATGATCTGA
AA sequence Show only first row Show all	>Lus10037053 pacid=23152418 polypeptide=Lus10037053 locus=Lus10037053.g ID=Lus10037053.BGIv1.0 annot-version=v1.0 MWEKQSHRSSSSSPFRESLKSLEADIQHANTLAASLPGDYGGDCVQMRLSFSPIAPYLLFLVEWMDYSCTDALPNYLGLLHVLVYKVYIDGVPTLSCKER RASLREFYAILYPSLRQLEGQFPESDHKRSRGGEVLTTRKRAEERRKLADNEFERDDECGICMETGSKMVLPDCGHSLCMNCFHDWNNRSKSCPFCRGSL KRVRSIDLWVLISNGDIVDAATLAEENLRRFYLYVENLSLVMPEISGHAILFDYMI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47160			RING/U-box superfamily protein...		Lus10037053 [exp]	0	1
AT3G47160			RING/U-box superfamily protein...		Lus10036934 [exp]	1.0	0.9604
AT5G05140			Transcription elongation facto...		Lus10027295 [exp]	1.7	0.9386
AT1G23870		ATTPS9	TREHALOSE -6-PHOSPHATASE SYNTH...		Lus10029175 [exp]	3.7	0.9390
AT1G56420			unknown protein		Lus10010921 [exp]	4.0	0.9350
AT3G48530		KING1	SNF1-related protein kinase re...		Lus10022458 [exp]	4.7	0.9260
AT1G77660			Histone H3 K4-specific methylt...		Lus10008325 [exp]	4.9	0.9252
AT4G34370		ATARI1	ARABIDOPSIS ARIADNE 1, ARIADNE...		Lus10042348 [exp]	6.0	0.9088
AT3G15290			3-hydroxyacyl-CoA dehydrogenas...		Lus10012681 [exp]	6.5	0.9320
AT2G24100		ASG1	ALTERED SEED GERMINATION 1, un...		Lus10024097 [exp]	7.3	0.9303
AT3G02420			unknown protein		Lus10034084 [exp]	8.0	0.8995

Compare expression of checked genes

Lus10037053 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.