Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26050 123 / 1e-29 TPX2 (targeting protein for Xklp2) protein family (.1) AT3G01710 102 / 2e-23 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) AT5G40700 100 / 3e-23 unknown protein AT3G27350 100 / 3e-23 unknown protein AT1G24160 84 / 6e-17 unknown protein AT1G70950 83 / 2e-16 TPX2 (targeting protein for Xklp2) protein family (.1) AT1G70100 81 / 5e-16 unknown protein AT1G23060 74 / 5e-14 unknown protein AT4G32330 44 / 0.0003 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2), TPX2 (targeting protein for Xklp2) protein family (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036933 [exp] 369 / 1e-120 AT1G71680 142 / 8e-37 Transmembrane amino acid transporter family protein (.1) Lus10029213 [exp] 89 / 1e-19 AT1G24160 135 / 2e-36 unknown protein Lus10032115 [exp] 92 / 3e-19 AT3G01710 181 / 4e-52 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) Lus10010725 [exp] 91 / 5e-19 AT1G70100 213 / 2e-62 unknown protein Lus10014571 [exp] 88 / 5e-18 AT3G01710 100 / 1e-22 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) Lus10002952 [exp] 69 / 2e-12 AT1G24160 77 / 1e-15 unknown protein Lus10003514 [exp] 67 / 1e-11 AT1G24160 76 / 2e-14 unknown protein Lus10002915 [exp] 44 / 0.0004 AT4G32330 228 / 2e-70 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2), TPX2 (targeting protein for Xklp2) protein family (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G180900 [exp] 157 / 7e-41 AT3G26050 119 / 4e-28 TPX2 (targeting protein for Xklp2) protein family (.1) Potri.010G053200 [exp] 152 / 1e-39 AT3G26050 113 / 1e-26 TPX2 (targeting protein for Xklp2) protein family (.1) Potri.001G336300 [exp] 125 / 4e-30 AT3G27350 124 / 1e-31 unknown protein Potri.008G192800 [exp] 89 / 1e-18 AT1G70100 197 / 6e-57 unknown protein Potri.010G038100 [exp] 88 / 4e-18 AT1G70100 196 / 4e-56 unknown protein Potri.010G113000 [exp] 86 / 2e-17 AT1G70950 147 / 5e-38 TPX2 (targeting protein for Xklp2) protein family (.1) Potri.008G129300 [exp] 85 / 4e-17 AT1G70950 241 / 2e-72 TPX2 (targeting protein for Xklp2) protein family (.1) Potri.019G075700 [exp] 80 / 2e-15 AT5G40700 74 / 1e-14 unknown protein Potri.013G101300 [exp] 76 / 3e-14 AT1G24160 71 / 7e-13 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10037054 pacid=23152559 polypeptide=Lus10037054 locus=Lus10037054.g ID=Lus10037054.BGIv1.0 annot-version=v1.0 ATGGGTGACTCGGCTGCTTGTCTCATGAGATCATTCTCCCATCCCTCTAATTCCATCCGCGAATCTCAAGAGGGAGACCCGCTTCGAGCATTGACCGAAT CGATCTCGTTCGGGAGATTTGCTTCGGAGTCGTTAGCCTGGGAGAAATGGTCAGCTTTCTCCCACAACCGCTACTTGGAGGAAGTTGAGCAGTTCTCCAA ACCGGGATCGGTTGCTGCCAAGAAGGCCTTCTTCGAAGCGCATTACAAGAAGAGAGCCGCCATGAAAAAAGCAGCATTGCTGGAGCAGCAAGTCTCCACT GAGCCTGCTGATGTGGCGAATTCGGATTCGAATCCGGACACTGTTAGCTCAGTTGAAGCACAGCAGCAGCAGACCCTGATACTCAAAATCGATGGTTCGC CTAGGCTTGAAACGATTGTGGACAATGTGGATGAGTTGATGGGAGAAGGAACTCCAATCAAGGAATCAATGGATGTACAAAGTAACAAAAGGCGAAAGAG TTCTGCTTCGTCAGCAGGTCGTAGCAGCAAAACAACATCAGGAATGTCAAAGTCAGCTGCTGCTGATAAACAGACTGCAACAGTTGTGTCCCTGAAGCTT GAAATGGACTATTCACCTAATATCGAAAGAGTTGCCACCGAATCTGAAGTTGGAATTGATGAGAAAATGCATGTGGACAATGTTGGTGATACAATCAGAG AAGGAACTCCAATCAAGGAATCAATGGATTTACAAAGTAACAAAAGGCGAAAGAGTTCTGCTTCGTCAACGGCTCGTAACAGCAAAACAACAACAACGAA AACATCAGGAATGTCAAAGTCAGCTTCTGCTGATAAACAGACTGTAATAGCTGTGTCCCCAAAGCTCGAAATGGACTATTCGCCTAATCTTGAAACAGTT GTGACAGAATCTGAAGTTGATATCACAACTCCAACCAAGGAATCAATGGATTTACAAAGAAACAAAAGGCGAAAGAGTTCTGCTTCATCAGCAGGTCGTA CTAAAACAACAACATCGACATCAATGTCAAAGTCTGCTGCTACTAAACAGACTGCTGCAACTTCATCCTCTCGGACAAAAGTTGGAACCGAGAAGAAGGT TGCAGAGGACACACCGGTATACAGAAAGAGATTAGCTCCGAAGGCTGTCCATATGTCTATCAACTTTGCTTCTAGGCTGTGGGAAACTGGTAAAAGTTCT TTAAGGAAGTCTAAAGAGCATGGAACTGGTCTCAAGAGTGCTGCAGTGACCAAGGGATCTGTTCAAGGCGAATTAAAGATTCGCGCTTCAGTGGCTGCAA TCAAGGCGTCTGTTCATGGCAAATCAGAGATTCGCTCTTCGATGGCTGTAACCAAGAAATCTGTTCAAGCGGAACAAAAGATTCGTGCTTCAGTGGCTAC TGCAACCAAGATCATGGAAGAAAGAAACAAAGCCAAGGAGGCAGAAAGTCTGCAAATGCAGGCAAAAGCTAAGGAGAAAGCTAAGATTCATTCAAATATT CTGCGGCAAAGCACTGCTACCTCAAGAACAAGACCGGATGACGATTCAAGTTGCAGGCCGCAGTCCGTAGCTAACCACACAAGGAAGTCGCAGGTCCCAT TGACGAGACCTCGATCCCCAAAACTCGGAAGGAAGCCAGCAGCTTCTTCCAGTGCAAACATGGAAGCAAACAAGTGCAGGAGTTCAGTTAGAGCTTCAGT GAATATTACGGAAAACTCGAACTCGTCCAAACGTGTTGTGCCGAAGAAGAGTATCCAAAGCACGAACCGTTCATCGACCAGTCTATTACCGAAAAGAAAG ACACAAGAGAATGCCTCACCAAACATCCAGCTATGA
AA sequence Show only first row Show all	>Lus10037054 pacid=23152559 polypeptide=Lus10037054 locus=Lus10037054.g ID=Lus10037054.BGIv1.0 annot-version=v1.0 MGDSAACLMRSFSHPSNSIRESQEGDPLRALTESISFGRFASESLAWEKWSAFSHNRYLEEVEQFSKPGSVAAKKAFFEAHYKKRAAMKKAALLEQQVST EPADVANSDSNPDTVSSVEAQQQQTLILKIDGSPRLETIVDNVDELMGEGTPIKESMDVQSNKRRKSSASSAGRSSKTTSGMSKSAAADKQTATVVSLKL EMDYSPNIERVATESEVGIDEKMHVDNVGDTIREGTPIKESMDLQSNKRRKSSASSTARNSKTTTTKTSGMSKSASADKQTVIAVSPKLEMDYSPNLETV VTESEVDITTPTKESMDLQRNKRRKSSASSAGRTKTTTSTSMSKSAATKQTAATSSSRTKVGTEKKVAEDTPVYRKRLAPKAVHMSINFASRLWETGKSS LRKSKEHGTGLKSAAVTKGSVQGELKIRASVAAIKASVHGKSEIRSSMAVTKKSVQAEQKIRASVATATKIMEERNKAKEAESLQMQAKAKEKAKIHSNI LRQSTATSRTRPDDDSSCRPQSVANHTRKSQVPLTRPRSPKLGRKPAASSSANMEANKCRSSVRASVNITENSNSSKRVVPKKSIQSTNRSSTSLLPKRK TQENASPNIQL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26050			TPX2 (targeting protein for Xk...		Lus10037054 [exp]	0	1
					Lus10001684 [exp]	1.4	0.9744
AT1G03780		AtTPX2, TPX2	targeting protein for XKLP2 (....		Lus10017715 [exp]	2.8	0.9749
AT2G20635			ATP binding;protein kinases;pr...		Lus10017714 [exp]	3.9	0.9732
AT5G66150			Glycosyl hydrolase family 38 p...		Lus10025960 [exp]	3.9	0.9551
AT2G32590		EMB2795	EMBRYO DEFECTIVE 2795, unknown...		Lus10035296 [exp]	4.0	0.9721
AT4G02800			unknown protein		Lus10022037 [exp]	7.7	0.9563
AT2G37420			ATP binding microtubule motor ...		Lus10024429 [exp]	8.1	0.9641
AT2G20590			Reticulon family protein (.1.2...		Lus10039890 [exp]	11.0	0.9574
AT3G44050			P-loop containing nucleoside t...		Lus10013377 [exp]	11.3	0.9541
AT3G51280			Tetratricopeptide repeat (TPR)...		Lus10041887 [exp]	12.7	0.9620

Compare expression of checked genes

Lus10037054 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.