Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27320 468 / 2e-164 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G14310 454 / 5e-159 ATCXE16 carboxyesterase 16 (.1) AT3G05120 134 / 1e-35 ATGID1A, GID1A GA INSENSITIVE DWARF1A, alpha/beta-Hydrolases superfamily protein (.1) AT5G27320 134 / 1e-35 ATGID1C, GID1C GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1) AT3G63010 133 / 2e-35 ATGID1B, GID1B GA INSENSITIVE DWARF1B, alpha/beta-Hydrolases superfamily protein (.1) AT5G62180 124 / 2e-32 ATCXE20 carboxyesterase 20 (.1) AT2G45600 109 / 7e-27 alpha/beta-Hydrolases superfamily protein (.1) AT2G45610 108 / 2e-26 alpha/beta-Hydrolases superfamily protein (.1) AT5G23530 108 / 2e-26 ATCXE18 carboxyesterase 18 (.1) AT3G48700 96 / 5e-22 ATCXE13 carboxyesterase 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036931 [exp] 758 / 0 AT3G27320 476 / 9e-168 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10022326 [exp] 427 / 1e-147 AT3G27320 660 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10008439 [exp] 128 / 1e-33 AT5G06570 281 / 8e-94 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10002254 [exp] 126 / 6e-33 AT5G27320 550 / 0.0 GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1) Lus10000928 [exp] 124 / 4e-32 AT5G27320 553 / 0.0 GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1) Lus10036168 [exp] 124 / 4e-32 AT5G06570 321 / 2e-109 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10039162 [exp] 120 / 8e-31 AT5G23530 324 / 3e-110 carboxyesterase 18 (.1) Lus10024087 [exp] 119 / 2e-30 AT5G16080 187 / 1e-56 carboxyesterase 17 (.1) Lus10013774 [exp] 119 / 4e-30 AT5G23530 315 / 2e-106 carboxyesterase 18 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G180600 [exp] 538 / 0 AT3G27320 568 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.010G053700 [exp] 530 / 0 AT3G27320 563 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.008G180500 [exp] 509 / 0 AT3G27320 563 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.013G028700 [exp] 140 / 4e-38 AT5G27320 608 / 0.0 GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1) Potri.001G032400 [exp] 139 / 1e-37 AT1G68620 185 / 9e-56 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G040600 [exp] 135 / 4e-36 AT5G27320 570 / 0.0 GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1) Potri.003G192650 [exp] 134 / 4e-36 AT5G16080 182 / 1e-54 carboxyesterase 17 (.1) Potri.014G135900 [exp] 132 / 3e-35 AT3G63010 537 / 0.0 GA INSENSITIVE DWARF1B, alpha/beta-Hydrolases superfamily protein (.1) Potri.003G192600 [exp] 129 / 4e-34 AT1G68620 173 / 2e-51 alpha/beta-Hydrolases superfamily protein (.1) Potri.004G092500 [exp] 129 / 6e-34 AT5G23530 388 / 3e-135 carboxyesterase 18 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF07859 [flax] [poplar] Abhydrolase_3 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10037056 pacid=23152278 polypeptide=Lus10037056 locus=Lus10037056.g ID=Lus10037056.BGIv1.0 annot-version=v1.0 ATGATCTCCAGCTTAATCGCCAATTTGAATTCAATCGTCGCCAAGTACCAGCACAAGCACCTCCTTCAAACCCTAATCCAACAACAACAGCGACAGCAAA ATCCAAATCCGAACCAAAACCCATTTGGTATCACTTCCCGGGCGTCGCAATCGACCGCAGCCAGCAATCCATCTTTCGTCAACGGTGTAGCCTCGAAAGA TCTCCACATAGACCCGCTTTCCTCGGTCTCTGTTAGAATTTTCCTTCCTGACACGGTCGTCTCTCCTCAATCGCGGGTTTCTGATCGGTACAGTGGGTAC GCTCCTTCCGGGAAGAAGCTGAGGAAGGTTCCGGTGGTGTTGCAGTTTCATGGAGGTGGGTTTGTGAGTGGGAGTAATGAGTCAGGGGAGAATGATATGT TCTGTAGGAAGGTTGCGAAGCTGTGGGATGCTGTGGTTGTTTCCGTAGGGTATAGATTGGCGCCGGAGAGTAAGTATCCGGCGGCGTTTGAGGATGGGGT GAAGGTGCTCAATTGGTTGGTGAAACAGGCGAATTTGGGGGTTTATGGGAGGTTAGGGTTTGAGAGTGGGAATTTTGATAGGTTTGGTGTGTCTATGGTT GAGCCTTGGCTGGCTGCTCATGGAGATCCTTCTAGGTGTGTGCTCCTTGGGGCAAGTTCCGGTGCAAACATAGCAAACTACGTGGCGCAAAAGGCTTTGG AGGAAGGCACTCGGTTAAGTCCTGTGAAGATAGTGGCACAAGTTCTGATGTACCCATTTTTCATCGATACTACATCATCACATTGTGAAACAAAGTTGGC AACCTCGTATTTCTACGACAAGGCTATGTGTAGTACGGCATGGAAGCTGTTCCTTCCAGAAGGAGAATTCAATCTACATCACGCAGCTGCTAACCCTTTC ATTCCTGGGAAACACCCACCTCTAAAGCACATGCCACCAACTCTGACAGTTGTTGCAGAGCATGATTTGATGATACACAGCGCTATTGCATACTCGGAGG AGCTACGGCGGGTCAATGTGGATGCACCCCTTCTCGAGTATAAGAACGTCACTCATGACTTTGCCACTCTTGGAGTGCTTCTGCAGATGCCACAGGCTCA GGCTTGTGCAGACGATATCGCCATTTGGGTCAAGAAGTACATATCAGTTCGTGGCAATGAGCTTTCTTACTAA
AA sequence Show only first row Show all	>Lus10037056 pacid=23152278 polypeptide=Lus10037056 locus=Lus10037056.g ID=Lus10037056.BGIv1.0 annot-version=v1.0 MISSLIANLNSIVAKYQHKHLLQTLIQQQQRQQNPNPNQNPFGITSRASQSTAASNPSFVNGVASKDLHIDPLSSVSVRIFLPDTVVSPQSRVSDRYSGY APSGKKLRKVPVVLQFHGGGFVSGSNESGENDMFCRKVAKLWDAVVVSVGYRLAPESKYPAAFEDGVKVLNWLVKQANLGVYGRLGFESGNFDRFGVSMV EPWLAAHGDPSRCVLLGASSGANIANYVAQKALEEGTRLSPVKIVAQVLMYPFFIDTTSSHCETKLATSYFYDKAMCSTAWKLFLPEGEFNLHHAAANPF IPGKHPPLKHMPPTLTVVAEHDLMIHSAIAYSEELRRVNVDAPLLEYKNVTHDFATLGVLLQMPQAQACADDIAIWVKKYISVRGNELSY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G27320			alpha/beta-Hydrolases superfam...		Lus10037056 [exp]	0	1
AT1G67970	HSF	AT-HSFA8	heat shock transcription facto...		Lus10001591 [exp]	1.0	0.8495
AT1G29690		CAD1	constitutively activated cell ...		Lus10025153 [exp]	3.7	0.8471
AT5G62910			RING/U-box superfamily protein...		Lus10042156 [exp]	4.0	0.8199
AT2G19260			RING/FYVE/PHD zinc finger supe...		Lus10015537 [exp]	4.0	0.7999
AT1G34220			Regulator of Vps4 activity in ...		Lus10006061 [exp]	6.0	0.8177
AT1G34220			Regulator of Vps4 activity in ...		Lus10028724 [exp]	6.7	0.8450
AT1G16250			Galactose oxidase/kelch repeat...		Lus10013899 [exp]	8.5	0.8127
AT1G53590		NTMCTYPE6.1 ,NT...	Calcium-dependent lipid-bindin...		Lus10013710 [exp]	12.0	0.7799
AT5G60580			RING/U-box superfamily protein...		Lus10037410 [exp]	12.4	0.7997
AT5G60610			F-box/RNI-like superfamily pro...		Lus10004718 [exp]	15.2	0.7554

Compare expression of checked genes

Lus10037056 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.