Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26020 699 / 0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) AT1G13460 669 / 0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) AT4G15415 635 / 0 ATB'GAMMA, ATB' GAMMA Protein phosphatase 2A regulatory B subunit family protein (.1.2) AT3G21650 628 / 0 Protein phosphatase 2A regulatory B subunit family protein (.1) AT3G26030 597 / 0 ATB' DELTA, ATB'DELTA serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime delta (.1) AT3G09880 573 / 0 ATB' BETA, ATB'BETA Protein phosphatase 2A regulatory B subunit family protein (.1) AT5G03470 560 / 0 ATB' ALPHA, ATB'ALPHA Protein phosphatase 2A regulatory B subunit family protein (.1) AT5G25510 511 / 2e-177 Protein phosphatase 2A regulatory B subunit family protein (.1) AT3G54930 496 / 1e-171 Protein phosphatase 2A regulatory B subunit family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036926 [exp] 975 / 0 AT3G26020 709 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Lus10032082 [exp] 673 / 0 AT4G15415 726 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Lus10015144 [exp] 647 / 0 AT4G15415 753 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Lus10030002 [exp] 640 / 0 AT4G15415 763 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Lus10035321 [exp] 638 / 0 AT4G15415 764 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Lus10006440 [exp] 621 / 0 AT3G26020 651 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Lus10031536 [exp] 617 / 0 AT3G26020 724 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Lus10011381 [exp] 615 / 0 AT3G26020 643 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Lus10014619 [exp] 578 / 0 AT4G15415 604 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G054400 [exp] 732 / 0 AT3G26020 730 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Potri.008G179900 [exp] 729 / 0 AT3G26020 731 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Potri.010G054300 [exp] 705 / 0 AT3G26020 746 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Potri.008G180000 [exp] 694 / 0 AT3G26020 711 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Potri.017G070100 [exp] 679 / 0 AT1G13460 728 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Potri.014G157000 [exp] 660 / 0 AT3G21650 775 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Potri.002G226200 [exp] 647 / 0 AT4G15415 740 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Potri.016G098400 [exp] 560 / 0 AT3G09880 743 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Potri.006G122300 [exp] 552 / 0 AT3G09880 692 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Potri.006G247100 [exp] 525 / 0 AT5G25510 800 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01603 [flax] [poplar] B56 Protein phosphatase 2A regulatory B subunit (B56 family)
Representative CDS sequence Show only first row Show all	>Lus10037057 pacid=23152354 polypeptide=Lus10037057 locus=Lus10037057.g ID=Lus10037057.BGIv1.0 annot-version=v1.0 ATGATCAAGCAGCTGTTAGGGAAGATTCCTAGGAAGTCGTCAAAGTCGGGCGAAAATGGCGAAACCAGAAGAAAAAGTGGGAAGAAGAAAAGCTCAAAGG CTGGTAGTAATAACAATGATTCTTCAAAGGGGAGTGGTAATGAGATCATCAACAAGTCTGGGTATGAACGGTTGAACCATCCCGGTTCAGAATCAGCTGG ACAGACCAATAATGGAAGCATCAAGATTAGTGCTTTGAACCAAAATGGCAACTCCAACCTTGGATTGGGTTTGTATGCCTATGAACCATTGCCTGCATTC AAGGATGTTCAGAATTCAGAGAAGCCGGCGTTGTTCCTTAAAAAGTTGAAGCTATGCAGCGTTGTGTTCGACTTCACCGATCCGGCTAACCACGTTAAGG AAAAAGAGCTCAAGAGGCAGACATTGTTGGAGCTAGTGGACTATGTCACCTCCGCGAACTCGACAAAATTCAGCGAGACCGGCATTCAAGAAGTCGTAAA GATGGTGACTTTGAACATTTTCCGGACTCCGAGTCCTCAACCGAGGGAGAACAAGGTTATAGACGGGGTGGACTTGGAAGAAGAGGAGCCTACCATGGAT CTAGCTTGGCCGCATTTGCAAATTGTGTACGAGTTCTTCTTGAGGTTCGTTGCATCCTCGGAGACCGATGTTAAGTTGACCAAACGTTACATTGATCAAC GTTTCGTTCTGAAATTGTTGGAACTGGTCGACTCAGAGGATCCGAGGGAGAGAGAGTACTTGAAAACGATTCTGCACAGGATATATGGGAAGTTCATGGT GCATCGTCCGTACATAAGGAAGTCTATCAACAATGTGTTCTATCAGTTTGTGTTCGAGACCGAGAAGCATAACGGGATTGCTGAGCTTCTGGAGATCTTG GGGAGCATTATCAACGGGTTTGCGTTACCGTTGAAAGATGAGCACAAGCTGTTCCTTGTTCGAGCTCTTATTCCATTGCATAAGCCAAGGTGCTTGGCTA TGTACCACTTGCCTTTGTCTTACTGCATTACGCAGTTTGTCGAGAAAGATTGCAAGCTGGCTGATGTTGTGATCAGAGGCCTGTTGAAGTACTGGCCGGT CACCAATAGTTCGAAGGAAGTTATGTTTTTGAATGAACTTGAGGAGGTTCTCGAAGCCACTCAACCCTCGGAGTTCCAGCGATGCATGGTCCCCCTCTTC CATCAGATCGGTCGGTGTTTGAATAGTTCGCACTTTCAGGTTGCTGAAAGAGCATTGTTCCTCTGGAACAACGATCCAATCGGAAACTTGATCAAACAAA ACCGGAAGTCCATCCTGCCGATCATTCTCCCTGCGTTAGAGAAGAATACAAGCAGTCACTGGAATCAAGCTGTCCGTAGCTTGACTATAAATGTACGCAA GATCTTCGAAGATCTGGATCCTGAGCTGTTCAACGAATGCCTGGTGAAGTTCCAGGAAACTCAGAAGAAGGGAGACGAGACTAAAGCGAGACAAGACGCT CGATGGAGACGCTTGGAAGAGATAGCAGCTGCTCAGAAAACTGCAGGTAACAACAAAACAGCATCTGGAATTCGTTATTCCATTAATGATCGTCAGGAGT TTGATCCAGTCGAAGAGGAAGAAGCATACCATGCACCAACAGAAAAGAACGAAACAAGTCGAACTACGATTCCAGCTGAACTGAAACGGCTGGAAATTAC TGCCGCCTGCAAATTTCCAATGCTTGTGTTGTCAATCCTGAAGAGACAGACTCTTCGGAGTTACTAG
AA sequence Show only first row Show all	>Lus10037057 pacid=23152354 polypeptide=Lus10037057 locus=Lus10037057.g ID=Lus10037057.BGIv1.0 annot-version=v1.0 MIKQLLGKIPRKSSKSGENGETRRKSGKKKSSKAGSNNNDSSKGSGNEIINKSGYERLNHPGSESAGQTNNGSIKISALNQNGNSNLGLGLYAYEPLPAF KDVQNSEKPALFLKKLKLCSVVFDFTDPANHVKEKELKRQTLLELVDYVTSANSTKFSETGIQEVVKMVTLNIFRTPSPQPRENKVIDGVDLEEEEPTMD LAWPHLQIVYEFFLRFVASSETDVKLTKRYIDQRFVLKLLELVDSEDPREREYLKTILHRIYGKFMVHRPYIRKSINNVFYQFVFETEKHNGIAELLEIL GSIINGFALPLKDEHKLFLVRALIPLHKPRCLAMYHLPLSYCITQFVEKDCKLADVVIRGLLKYWPVTNSSKEVMFLNELEEVLEATQPSEFQRCMVPLF HQIGRCLNSSHFQVAERALFLWNNDPIGNLIKQNRKSILPIILPALEKNTSSHWNQAVRSLTINVRKIFEDLDPELFNECLVKFQETQKKGDETKARQDA RWRRLEEIAAAQKTAGNNKTASGIRYSINDRQEFDPVEEEEAYHAPTEKNETSRTTIPAELKRLEITAACKFPMLVLSILKRQTLRSY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26020			Protein phosphatase 2A regulat...		Lus10037057 [exp]	0	1
AT3G59660			C2 domain-containing protein /...		Lus10025600 [exp]	2.2	0.9392
AT3G26935			DHHC-type zinc finger family p...		Lus10016754 [exp]	6.3	0.9353
AT1G06840			Leucine-rich repeat protein ki...		Lus10034445 [exp]	7.3	0.9341
AT5G55060			unknown protein		Lus10040061 [exp]	11.0	0.9339
AT5G54840		ATSGP1	Ras-related small GTP-binding ...		Lus10040044 [exp]	17.3	0.9315
AT2G36320			A20/AN1-like zinc finger famil...		Lus10003246 [exp]	17.5	0.9259
AT1G54610			Protein kinase superfamily pro...		Lus10001715 [exp]	18.7	0.9145
AT3G01650		RGLG1	RING domain ligase1 (.1)		Lus10014587 [exp]	21.0	0.9257
AT5G49710			unknown protein		Lus10015965 [exp]	22.2	0.9313
AT1G55730		ATCAX5	cation exchanger 5 (.1.2)		Lus10033396 [exp]	23.9	0.8927

Compare expression of checked genes

Lus10037057 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.