Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67690 858 / 0 Zincin-like metalloproteases family protein (.1) AT5G51540 204 / 5e-56 Zincin-like metalloproteases family protein (.1) AT5G65620 202 / 5e-55 Zincin-like metalloproteases family protein (.1) AT5G10540 198 / 4e-54 Zincin-like metalloproteases family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036925 [exp] 1387 / 0 AT1G67690 826 / 0.0 Zincin-like metalloproteases family protein (.1) Lus10004276 [exp] 201 / 3e-54 AT5G10540 1183 / 0.0 Zincin-like metalloproteases family protein (.1) Lus10031715 [exp] 188 / 2e-50 AT5G51540 1017 / 0.0 Zincin-like metalloproteases family protein (.1) Lus10019236 [exp] 170 / 1e-43 AT5G65620 1073 / 0.0 Zincin-like metalloproteases family protein (.1) Lus10031136 [exp] 142 / 3e-35 AT5G51540 917 / 0.0 Zincin-like metalloproteases family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G054466 [exp] 1018 / 0 AT1G67690 850 / 0.0 Zincin-like metalloproteases family protein (.1) Potri.015G129300 [exp] 207 / 3e-57 AT5G51540 1015 / 0.0 Zincin-like metalloproteases family protein (.1) Potri.014G010100 [exp] 198 / 2e-53 AT5G65620 1199 / 0.0 Zincin-like metalloproteases family protein (.1) Potri.007G004600 [exp] 187 / 2e-50 AT5G65620 1196 / 0.0 Zincin-like metalloproteases family protein (.1) Potri.009G151300 [exp] 43 / 0.0005 AT5G65620 187 / 1e-54 Zincin-like metalloproteases family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0126 [flax] [poplar] Peptidase_MA PF01432 [flax] [poplar] Peptidase_M3 Peptidase family M3
Representative CDS sequence Show only first row Show all	>Lus10037058 pacid=23152557 polypeptide=Lus10037058 locus=Lus10037058.g ID=Lus10037058.BGIv1.0 annot-version=v1.0 ATGGAAGGTGAAGGACAAGCCGGCGAGGTGCGAGAGCTGGACGAGCCGAGCAGCAGCAGCAACCAGAAGAAGAGTGGGAGGCGGAACGTCGTCGCATTAA CCGGCGGCGCGGCAGTCTTCGTCCTAGCAGCTAACTTGGCAATCTACGCCTTCAATTGTCATCGGAAGAGACAGTCTAAGAAGAAATGTCTTCAAGGCTC CAGTGTTCGGATTAATCTCTCGGCGTCTGAAATTTTGAAATTGGCTGATGGAATCATTGCAAAGTCGAAGCGAGTTCACGATGCGGTTGCTTCAGTTCCT CTTGACAACGTCACATATGAGAACATTATTGCGCCATTGGCGGATTTGGAGGCGGAGCAGTTTGCCTTGGTTCAGTCTTGCCTATTTCCTAAGCTGGTAT GTGCTTCGGAGGATATACAGAAAGCAAGTGTTGAAGCTGAACGGAGAATCGATGCTCATGTTTTGGCATGCAGTCAACGAGAAGACTTGTATCGAGTAGT TAAAGCTGTTTCTGCAAAGGGAGATTGGAAGAATCCTGAAGCAAAACAATATATTAAATGCCTGGTAAGAGAATTTGAGCGGAATGGTTTGAACCTTACA GTCAGCAAAAGAGAGGAAGTCCAGCGGTTGAGAGCTAAAATAGATGAACTAAGCTTGCGTTACATTCGAAATTTAAATGATGATGACACGTGTCTCCTGT TCAGTGAGACGGAGCTTGAAGGATTGCCATCAGAATACCTGAAGGCAAGTTCACATGCTAAGTCATTTAATGTGCCCTTGCAGAGCTTAAAAAAGGATGC GAGTGGCAAATATAAGCTGTATATGAGAAGTAATCATGTTGTTGCTACCCTGGAACTTTGCAAGGTAGGACAAACCAGGAAGCGAGTTGCGATTGCATAT GGGAAGAGATGTGGACATATCAATCTTTCAGTTTTCGAAAGTTTGGTTGAACTGCGACACAAGTATGCCCGGTTACTTGGTCACTCAAACTTTGGGGAGT ATGCTGTTGATCTTAGAATGGCAAAGACACCCACAAAGGTATTTGAGTTCCTTGAAGATATATCTGCCCGTTTGACAAATTTGGCTACTAGGGAAATCTC GGTTTTGAAGGACTTAAAGAAAAAGGAGGAAGGAGATTTTACGTTTGCCATTGAGGATCTATTGTATTATGTCAAGAGGGCCGAGGCAAACCAATTTGAC CTTGACTTTAAAGCTCTTAAACAGTTCTTTCCCGTGGATTTGGTACTATCTGGCATCTTCAAAATAATTCAAGATCTATTTGGACTAAGGTTTGAAGAAA TCGGGGATGCTGAGGTTTGGCATCCTGATGTTAGTGTCTTTTCAGCCCACGACTTGAGTTCCGGGGAACTATTGGGACATTTTTATCTTGATCTATATAC AAGGGAAGGAAAATATGGTCATACCTGTGTGCTAGCACTTCAGAATGGTGCATTATCACACAATGGCGCGCGACAGAAATCAGTGGCATTGCTTATATCT CGGTTACAGAAAGGAGGAGACCAAGATCCTTGTCTGATGAGATTCTCTGAAGTAGTCAGTCTCTTCCATGAATTTGGGCACGTGGTCCAACATATCTCCA ACCGTGCACCATTTACCAAGCTATCAGGAATGTGTACGGATCCTGATTTTGTCGAGTTACCTGCTCTGTTGCTGGAAAATTGGTGTTATGAGATCTCCAC GCTGAAACTCATATCTGGGTTCCATCAGGATATCACAGTTCCCATTAAGGACGAAACGTGCAAATCCCTGAAACGGTGGCGGTATTCCTTTTCTGCACTT AAATTGAAGCAAGATATTCTATATTGTCTTTTTGATCAAATCATACATTCTGCTGATAATGTGGATATCATCGAGTTATTCAAGCAACTTCATCCAAAGG TCATGCTAGGACTGCCGATGTTGGAAGGCACCAATCCAGCTTCGTGTTTCCCTCGTAGCGCCATAGGCTACGAAGCAGCTTGCTATAGTCGGATATGGAG CGAGGTGTTTGCAGCTGACATCTTCGCATCCAAGTTTCGTAATGGCAATCTCTTGAATCACCAAGTTGGCATTGAGTTCAGGAACAAGGTATTATCCCCC GGAGGATCAAGGGACCCCATCGAACTCCTAACCGAATTTCTCGGCAGAGAACCCTCCATTCAAGCCTTCATTGACAGCAAATTAGAGAACACTTTCTAA
AA sequence Show only first row Show all	>Lus10037058 pacid=23152557 polypeptide=Lus10037058 locus=Lus10037058.g ID=Lus10037058.BGIv1.0 annot-version=v1.0 MEGEGQAGEVRELDEPSSSSNQKKSGRRNVVALTGGAAVFVLAANLAIYAFNCHRKRQSKKKCLQGSSVRINLSASEILKLADGIIAKSKRVHDAVASVP LDNVTYENIIAPLADLEAEQFALVQSCLFPKLVCASEDIQKASVEAERRIDAHVLACSQREDLYRVVKAVSAKGDWKNPEAKQYIKCLVREFERNGLNLT VSKREEVQRLRAKIDELSLRYIRNLNDDDTCLLFSETELEGLPSEYLKASSHAKSFNVPLQSLKKDASGKYKLYMRSNHVVATLELCKVGQTRKRVAIAY GKRCGHINLSVFESLVELRHKYARLLGHSNFGEYAVDLRMAKTPTKVFEFLEDISARLTNLATREISVLKDLKKKEEGDFTFAIEDLLYYVKRAEANQFD LDFKALKQFFPVDLVLSGIFKIIQDLFGLRFEEIGDAEVWHPDVSVFSAHDLSSGELLGHFYLDLYTREGKYGHTCVLALQNGALSHNGARQKSVALLIS RLQKGGDQDPCLMRFSEVVSLFHEFGHVVQHISNRAPFTKLSGMCTDPDFVELPALLLENWCYEISTLKLISGFHQDITVPIKDETCKSLKRWRYSFSAL KLKQDILYCLFDQIIHSADNVDIIELFKQLHPKVMLGLPMLEGTNPASCFPRSAIGYEAACYSRIWSEVFAADIFASKFRNGNLLNHQVGIEFRNKVLSP GGSRDPIELLTEFLGREPSIQAFIDSKLENTF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G67690			Zincin-like metalloproteases f...		Lus10037058 [exp]	0	1
AT1G67690			Zincin-like metalloproteases f...		Lus10036925 [exp]	1.0	0.8819
AT5G52950			unknown protein		Lus10027565 [exp]	3.2	0.8662
AT4G23440			Disease resistance protein (TI...		Lus10032275 [exp]	4.5	0.8403
AT2G06040			unknown protein		Lus10033320 [exp]	5.5	0.7968
AT1G56290			CwfJ-like family protein (.1)		Lus10022209 [exp]	5.7	0.8508
AT1G23030		PUB11	ARM repeat superfamily protein...		Lus10013745 [exp]	7.0	0.8214
AT1G08260		ESD7, EMB142, E...	TILTED 1, EARLY IN SHORT DAYS ...		Lus10006269 [exp]	7.1	0.8087
AT2G42260		PYM, UVI4	POLYCHOME, uv-b-insensitive 4 ...		Lus10024522 [exp]	7.3	0.8326
AT3G32940			RNA-binding KH domain-containi...		Lus10039188 [exp]	7.4	0.8055
AT5G42920		AtTHO5	THO complex, subunit 5 (.1.2)		Lus10009754 [exp]	7.7	0.8409

Compare expression of checked genes

Lus10037058 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.