Plant FIBer expression Database

Lus10037059 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G67680 707 / 0 SRP72 RNA-binding domain (.1)
AT1G67650 667 / 0 SRP72 RNA-binding domain (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10006439
[exp]
917 / 0 AT1G67680 783 / 0.0 SRP72 RNA-binding domain (.1)
Lus10011379
[exp]
915 / 0 AT1G67680 773 / 0.0 SRP72 RNA-binding domain (.1)
Lus10036924
[exp]
617 / 0 AT1G67680 440 / 3e-149 SRP72 RNA-binding domain (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G216400
[exp]
794 / 0 AT1G67680 767 / 0.0 SRP72 RNA-binding domain (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF08492 SRP72 SRP72 RNA-binding domain
Representative CDS sequence
>Lus10037059 pacid=23152264 polypeptide=Lus10037059 locus=Lus10037059.g ID=Lus10037059.BGIv1.0 annot-version=v1.0
ATGGCTCCTAAGCCGAAGGACAAGGGGAAACCTTCCCCAGCATCGTCGCAGCCGCCAGCCACCATCGAAGATCTCTTCACCAAACTCAATGCACACATCG
AGGGATCGAACGATCGGAATAACGAGCAATCGGAGCTGGAGAAGGCCGTTAAAGTTGCCAACCAAGTTCTCTCGATTGCTCCTGGAGACGAAGACGCGCT
CCGATGCAACGTGGTGGCGTTGATTAAGAACGACAGTTATGACGATGCGCTGTCGACAATTCGTTCTGCTCGGAAGCTCCAATTCAATTTCAGTTTCGAA
GAGGCGTACTGCTTATACAAACAAAACAAACTGGATGAAGCATTGGAGTTGCTGAAAGGGCAGGAGAGGAATTCTGAAACAATGCTGTTGGAAGCTCAGA
TTCTTTTCCGTCTAGGACGAATGGATGCTTGCATTGATGTCTATAAAAATCTTAGGAAGTCAAAGCTCGATTCGCCAGAGATAAATCTTGCTGCGAGTTT
GATTTTAGCTGGGAGATCCTCTGAGGTGCAAAGCATGCTGGATGCACAGCGGATCAAACCATCTAGCAGCTATGACTTGGCATTCAACACAGCCTGTTCT
CTGGTTGAAACGAAGAAGTATGCAGAAGCGGAACAGCTGTTGCAGCAAGCAAAAAGAATTGGTCAGGAATCGTTGCTGGATGCTAACTGGGCTGAGGAGG
ACATAGAAATTGAGTTAGCTCCGATAGCTGTCCAACTGGCTTATGTTCAGCAGCTTTTAGGACGATCGCAGGAAGCCGTGGAAGCTTACACAGAGATGAT
TAGCCCAAATCTTGCGGATGATTTGTCATCCCTAGCGGTGGCTGTGAATAACCTTGTTGCTGAAAGGGGGCCAAAAGAGGTCTCCGATAGTCTGAAGAAA
CTTGATCTCCTGAAGGAGCAAGGCATTATAGACTTCCGCATTGCTAATGGTCTTGACAAGCTTTCTCCAAAACAAAGAGAGACTATCTACGCGAATCGTT
TGCTTCTACTTATCCATGCAAATAAGATGGAACAGGCACGGGAGCTTGTTTCAGCATTACCAGGAATGTTTGTCGACAGCGAAATGCCTGTACTCCTTCA
AGCTGCAGTACTGGTCAGGGAGAAAAAGGCTACTAGAGCTGAAGAAATACTCGATCAGTTTTCCGAGAAGTGCCCTCTCAAGTCCAAGGTTTCCCTTCTT
GCGAGGGCACAAATCGCTGCTGCTTACGGCCATCACCAGATTGCAGCCGACTCACTATCGAGAATCCCCGATATCCAACACATGCCTGCCACAGTTGCCA
CCCTTGTCGCCCTCAAAGAGCGAGCTGGAGACATCAACGGTGCATCTACAGTGCTCGACTCAGCAGTCAAATGGTGGACAAATGCCATGACCGAGAACAG
TAAGTTGAGCATTATAATGCAAGAAGCTGCTGCCTTCAAAGTGAAGCACGGGCAGGAAGCTGAAGCAGCTCGCCTTTTCGAGGAACTCGTCATGACCCAT
GGAAGCACCGAGGCATTAGTCGGGCTGGTCAGTACTATCGCACATTTTGACATTGACAAGGCGGAAACTTACAAGAAGAAGTTGAGCCCATTGCCCGGCT
TGAAGGGAATCGATGTTGATAGCCTGGAGAAGACATCCGGTGCTAAACCCATCGAAGGTGGCGCCTCTCGGGTTCCATCCGTTGAAGAGAGTAAGAAAGA
GAAGCAGCAGAAGAAGAAGAGGAAGAGAAAGCCAAGGTACCCGAAAGGATTCGACCCAGCAAACCCAGGACCTCTGCCGGACCCGGAAAGGTGGCTCCCA
AAGAGGGAGAGGTCAAGCTACAGACCAAAGAGAAAGGACAAGAGAGCAGCTCAAGTAAGAGGGTCTCAAGGTGCTGTAACTAGGGAAAAGACTGAAGCTC
CCCCTGCTGCTGTGACGAGTTCTTCGAACGCTTCAAAAGCAGCCAGTAGCAGCTCCAAATCTCAGTCCAACCATTCCTCCAAATCGTCGAAGAAGAAGTC
GAGGAGGTAA
AA sequence
>Lus10037059 pacid=23152264 polypeptide=Lus10037059 locus=Lus10037059.g ID=Lus10037059.BGIv1.0 annot-version=v1.0
MAPKPKDKGKPSPASSQPPATIEDLFTKLNAHIEGSNDRNNEQSELEKAVKVANQVLSIAPGDEDALRCNVVALIKNDSYDDALSTIRSARKLQFNFSFE
EAYCLYKQNKLDEALELLKGQERNSETMLLEAQILFRLGRMDACIDVYKNLRKSKLDSPEINLAASLILAGRSSEVQSMLDAQRIKPSSSYDLAFNTACS
LVETKKYAEAEQLLQQAKRIGQESLLDANWAEEDIEIELAPIAVQLAYVQQLLGRSQEAVEAYTEMISPNLADDLSSLAVAVNNLVAERGPKEVSDSLKK
LDLLKEQGIIDFRIANGLDKLSPKQRETIYANRLLLLIHANKMEQARELVSALPGMFVDSEMPVLLQAAVLVREKKATRAEEILDQFSEKCPLKSKVSLL
ARAQIAAAYGHHQIAADSLSRIPDIQHMPATVATLVALKERAGDINGASTVLDSAVKWWTNAMTENSKLSIIMQEAAAFKVKHGQEAEAARLFEELVMTH
GSTEALVGLVSTIAHFDIDKAETYKKKLSPLPGLKGIDVDSLEKTSGAKPIEGGASRVPSVEESKKEKQQKKKRKRKPRYPKGFDPANPGPLPDPERWLP
KRERSSYRPKRKDKRAAQVRGSQGAVTREKTEAPPAAVTSSSNASKAASSSSKSQSNHSSKSSKKKSRR

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G67680 SRP72 RNA-binding domain (.1) Lus10037059
[exp]
0 1
AT4G34260 AXY8, FUC95A ALTERED XYLOGLUCAN 8, 1,2-alph... Lus10026594
[exp]
1.4 0.9566
AT5G64420 DNA polymerase V family (.1) Lus10037435
[exp]
2.4 0.9465
AT1G14850 NUP155 nucleoporin 155 (.1) Lus10001586
[exp]
2.4 0.9533
AT4G10070 KH domain-containing protein (... Lus10002947
[exp]
2.8 0.9256
AT3G46740 MAR1, TOC75-III... MODIFIER OF ARG1 1, translocon... Lus10001566
[exp]
4.5 0.9194
AT4G26190 Haloacid dehalogenase-like hyd... Lus10007989
[exp]
5.3 0.9010
AT3G53320 unknown protein Lus10023170
[exp]
7.2 0.9048
AT5G25757 RNA polymerase I-associated fa... Lus10038622
[exp]
9.4 0.9393
AT1G80410 OMA, EMB2753 OMISHA, EMBRYO DEFECTIVE 2753,... Lus10011474
[exp]
9.5 0.9334
AT3G11830 TCP-1/cpn60 chaperonin family ... Lus10026773
[exp]
11.2 0.9256

Lus10037059 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.