Plant FIBer expression Database

Lus10037060 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G26000 299 / 5e-97 Ribonuclease inhibitor (.1)
AT3G27290 169 / 7e-48 RNI-like superfamily protein (.1)
AT2G01620 108 / 1e-26 MEE11 maternal effect embryo arrest 11, RNI-like superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10006438
[exp]
305 / 1e-98 AT3G26000 240 / 1e-73 Ribonuclease inhibitor (.1)
Lus10011378
[exp]
100 / 7e-25 AT3G26000 78 / 3e-17 Ribonuclease inhibitor (.1)
Lus10007930
[exp]
104 / 1e-24 AT2G01620 195 / 9e-61 maternal effect embryo arrest 11, RNI-like superfamily protein (.1)
Lus10013466
[exp]
91 / 4e-20 AT2G01620 174 / 6e-53 maternal effect embryo arrest 11, RNI-like superfamily protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G054600
[exp]
424 / 1e-145 AT3G26000 395 / 7e-135 Ribonuclease inhibitor (.1)
Potri.008G179800
[exp]
387 / 6e-132 AT3G26000 330 / 1e-109 Ribonuclease inhibitor (.1)
Potri.001G337300
[exp]
241 / 9e-75 AT3G26000 252 / 3e-79 Ribonuclease inhibitor (.1)
Potri.010G108600
[exp]
135 / 8e-36 AT2G01620 209 / 8e-66 maternal effect embryo arrest 11, RNI-like superfamily protein (.1)
Potri.008G133100
[exp]
61 / 5e-11 AT2G01620 68 / 2e-14 maternal effect embryo arrest 11, RNI-like superfamily protein (.1)
PFAM info
Representative CDS sequence
>Lus10037060 pacid=23152328 polypeptide=Lus10037060 locus=Lus10037060.g ID=Lus10037060.BGIv1.0 annot-version=v1.0
ATGGCTTTGAATTATTCACATCGGATGGTGTTGCCACCGCGTCCATCGGAGGATAGTTTGGTTTCACCGATGAGGGTTGGGAGCAGTTGCTTTGCTGACT
GCATAGCGGAGAATGTGTTAGATGGGTGTTTTGATTTTGGGAGGGATAGGTGTGAGTCTCAAGAGACTTTGCAGAAGGACATCTTGGATGTCCTGCCGTC
GGATCCTTTTGGGATGGATATAAGCACCACGTTTACTGCCATTAATGGCTGGCTACAGGATTTGGAGCTCGAGGGTTATGGTGGGTATGGCCATTATCAG
TTGTTTGCCGGGTTGAATTACTTTATTTGGAATAATGCATTCAGGTCTCAGGATTCACTTCCTGCAAATGTGAGGCTTAACTCCCCGGACCTGAACGTAG
TAGATGGTCAATTTGGTTATGGGCCATGTGAGTCTGTAGAGAACATGGAGTTAGAGATGGAGGATTCAAGCGGCTGTGATGCTGGCTTTGGGTTGGATTC
AGAGATGAAGGACTTATCGAGCTTGGGGGATGAAATGATGTACGATAATGATGTACATAGTGCTTCAGATGATATGGGTTTTCGAGATTGTTCTGATTGT
GGTGGAACTGGAACTTCTCTTCCTAGTGATGAGGGAAAGCTTCATCCTGGTTTTTCTTTTGCTCTTGGATATTTGAGCTTAAGGGACATTCTATCGGTTG
AAATGGTTTGCACTTCGCTGCACACGACAGTTAGAGATGACCCGTTCTTTTGGAGCAGGCTTTACATCGATCAACCACTGAATGAAAAGATCACGGATGA
TATTCTGATCAAATTAACTGATAGAGCTCAAGGTAATGTACAGCACTTGGTGTTGGTAGAGTGTCCATGGATTACTGGTGTTGGGTTGAAGCATGTACTT
GAGAATAATCCAAAGCTAACCAAGTTGAGTGTGCCTGGATGTTCTAGAGTTAACATTGAGACCATTGTGACAATCTTGAAAGAAATCAAGGTTTCTGGTA
AGCTGGGGTTGAAGCAGTTGAGGATTGGTGGAGTATATGGCGTGACACAAGAGCATTACGATGTGTTGAAGTTACTGTTGGAAGATGATACAGCAAAGCA
GCAGAAAGACAGGGAGCCACGATATTATCACCGAGGCAACCTTTATCTGTCATGTGATGATGACCGTGCCATTGACATCGAGATGTGCCCAAAATGCCTC
AACCATAGACTGGTCTACGACTGCCCTGCAGAAAGTTGCCAGCAAGTAAAGCAGTCATCTCAGGCTTGCAGAGCATGCGCGCTTTGCATATTGAGGTGTG
CTCAGTGTGGTCGTTGTATTAATGACAGTGAATATGAAGAGACATTTAGTCTGGACTGGCTATGTGCACTTTGTGGGAACATCCGTTAA
AA sequence
>Lus10037060 pacid=23152328 polypeptide=Lus10037060 locus=Lus10037060.g ID=Lus10037060.BGIv1.0 annot-version=v1.0
MALNYSHRMVLPPRPSEDSLVSPMRVGSSCFADCIAENVLDGCFDFGRDRCESQETLQKDILDVLPSDPFGMDISTTFTAINGWLQDLELEGYGGYGHYQ
LFAGLNYFIWNNAFRSQDSLPANVRLNSPDLNVVDGQFGYGPCESVENMELEMEDSSGCDAGFGLDSEMKDLSSLGDEMMYDNDVHSASDDMGFRDCSDC
GGTGTSLPSDEGKLHPGFSFALGYLSLRDILSVEMVCTSLHTTVRDDPFFWSRLYIDQPLNEKITDDILIKLTDRAQGNVQHLVLVECPWITGVGLKHVL
ENNPKLTKLSVPGCSRVNIETIVTILKEIKVSGKLGLKQLRIGGVYGVTQEHYDVLKLLLEDDTAKQQKDREPRYYHRGNLYLSCDDDRAIDIEMCPKCL
NHRLVYDCPAESCQQVKQSSQACRACALCILRCAQCGRCINDSEYEETFSLDWLCALCGNIR

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G26000 Ribonuclease inhibitor (.1) Lus10037060
[exp]
0 1
AT5G51710 ATKEA5, KEA5 K+ efflux antiporter 5, ARABID... Lus10031106
[exp]
8.5 0.7720
AT5G48560 bHLH bHLH078 basic helix-loop-helix (bHLH) ... Lus10003172
[exp]
9.2 0.7720
AT1G70530 CRK3 cysteine-rich RLK (RECEPTOR-li... Lus10013040
[exp]
14.7 0.7781
AT1G60940 SNRK2-10, SNRK2... SNF1-RELATED KINASE 2B, SUCROS... Lus10015464
[exp]
16.7 0.7543
AT1G21830 unknown protein Lus10025658
[exp]
20.5 0.6964
AT2G05755 Nodulin MtN21 /EamA-like trans... Lus10035313
[exp]
25.7 0.7340
AT1G15880 ATGOS11, GOS11 golgi snare 11 (.1) Lus10026058
[exp]
29.8 0.7660
AT1G54130 AT-RSH3, RSH3, ... RELA/SPOT homolog 3 (.1) Lus10037672
[exp]
30.6 0.7463
AT1G04990 C3HZnF Zinc finger C-x8-C-x5-C-x3-H t... Lus10035330
[exp]
31.2 0.7274
AT1G28960 ATNUDX15, ATNUD... ARABIDOPSIS THALIANA NUDIX HYD... Lus10015301
[exp]
31.6 0.7222

Lus10037060 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.