Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69200 531 / 0 FLN2 fructokinase-like 2 (.1) AT3G54090 290 / 5e-92 FLN1 fructokinase-like 1 (.1) AT5G51830 146 / 4e-39 pfkB-like carbohydrate kinase family protein (.1) AT4G10260 140 / 4e-37 pfkB-like carbohydrate kinase family protein (.1) AT3G59480 139 / 6e-37 pfkB-like carbohydrate kinase family protein (.1) AT2G31390 138 / 2e-36 STH pfkB-like carbohydrate kinase family protein (.1) AT1G06030 134 / 8e-35 pfkB-like carbohydrate kinase family protein (.1) AT1G06020 132 / 3e-34 pfkB-like carbohydrate kinase family protein (.1) AT1G66430 132 / 7e-34 pfkB-like carbohydrate kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036920 [exp] 801 / 0 AT1G69200 582 / 0.0 fructokinase-like 2 (.1) Lus10021118 [exp] 277 / 8e-87 AT3G54090 676 / 0.0 fructokinase-like 1 (.1) Lus10017191 [exp] 271 / 3e-84 AT3G54090 679 / 0.0 fructokinase-like 1 (.1) Lus10027401 [exp] 147 / 1e-39 AT5G51830 535 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10028089 [exp] 141 / 6e-38 AT4G10260 452 / 1e-161 pfkB-like carbohydrate kinase family protein (.1) Lus10031668 [exp] 143 / 8e-38 AT5G51830 522 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10013611 [exp] 136 / 1e-35 AT3G59480 559 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10026865 [exp] 135 / 3e-35 AT3G59480 560 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10009526 [exp] 135 / 5e-35 AT2G31390 553 / 0.0 pfkB-like carbohydrate kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G097300 [exp] 585 / 0 AT1G69200 598 / 0.0 fructokinase-like 2 (.1) Potri.016G109600 [exp] 279 / 9e-88 AT3G54090 630 / 0.0 fructokinase-like 1 (.1) Potri.015G134900 [exp] 155 / 3e-42 AT5G51830 456 / 1e-161 pfkB-like carbohydrate kinase family protein (.1) Potri.012G132700 [exp] 154 / 8e-42 AT5G51830 460 / 1e-163 pfkB-like carbohydrate kinase family protein (.1) Potri.004G089300 [exp] 141 / 6e-37 AT1G66430 527 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.019G063600 [exp] 137 / 3e-36 AT4G10260 550 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.017G029000 [exp] 135 / 7e-35 AT3G59480 568 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.007G129700 [exp] 132 / 3e-34 AT3G59480 559 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.017G126300 [exp] 120 / 2e-29 AT1G66430 519 / 0.0 pfkB-like carbohydrate kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0118 [flax] [poplar] Ribokinase PF00294 [flax] [poplar] PfkB pfkB family carbohydrate kinase
Representative CDS sequence Show only first row Show all	>Lus10037064 pacid=23152384 polypeptide=Lus10037064 locus=Lus10037064.g ID=Lus10037064.BGIv1.0 annot-version=v1.0 ATGGCGGCGGGTGAAGGAGTAGCTAGTGAGAATGGCCAAGTTGTTGCGAAGAAAGAGGTAACAGCTAAAAGGGGCCGAGGCCGGCCTCGAAAGAAACCAG TAGCAGCTGATGATGACGATGATGATGATGATGAGAAGAAGAAGAATTCAGAAATTAATTACGTTAAGACGAGAAGAAAAGCTTTTGAAGAAGAAGAAGA AGATGATGATGACGATGAAGAAGAAGAAGAAGAAGAGAAAACTGTTGTTGTTGAGAAAGTTAAGAGGGTAAGGAAGAGTAGGAAGAAAGATAATCATGTC AACAATGAGTCTGAACTTAAATCGAAACCGGAATTCCATACCAGTGATGGGGTTGAACAAGCTTCTTCAAAAGTTGTTTCCTTTGTGGAAGAGGATTCAA GTGATGTGGAGGAAGAAGACGAAGCTTCATTTCGTTCCAATGCTGAGGACTCGAGCGATGGGGATCTAGACTTTCTGGATAAAGATGAACAAGAAGAGGG CATAAGCGGCACTTACGGATGGCCTCCGCTCGTGTGTTGCTTCGGAGCAGCACAGCATGCCTTCGTTCCTTCAGGGAGGCGAGCTAACAGGCTACTGAAC TACGAAATCCATGACAGGATGAGGGATGCGTATTGGGAACCGGACAGGTTCGTGAGGGCTCCCGGAGGATGTGCTGGAGGTGTTGCGGTTGCCCTCGCGA GCTTGGGTGGTAAAGTTGCCTTCATGGGGAAGCTAGGGGATGACGATTTCGGTCAGGCTATGTTGTATTATATGAATGTGAGTAAAGTTCAGACACGTTC GGTGATCGTGGATGGTAAGAGGCCAACGACGGTTTCGAGGATCAGGCTTGCCAAGCGAGGACGGTTTCGAATGATTTGTACTCGATCCTCTGCTGAAGAT TCTTTGTCCAAGTCTGAGATCAACATAGATCTCCTGAGGGAGGCGAAGATGTTCTACTTCAACACGCACCCTCTGCTCGATCGAGGCATGCGGTCATCTA CTCTATACGCGATGAAGATATCGAAGAAACTCGGAGGAGTCATCTTCTACGATGTAAACCTCCCGCTGCCACTTTGGCAGTCTCGTGAAGAAACCAACGA GTTCATACGAGACGCATGGAACCATGCGAATGTTATCGAAGTAACCAAGCAAGAACTGGAGTTTCTGTGCGGAATAGAGCCCACCGAGGAGTTCGATACG AGGGACAACGACGATTCTAAGTTTGTCCATTATGGCAAAGAAGTAATTGATCAGCTCTGGCACGAAAACCTTCAAGTACTGTTTGTAACCAACGGTACTT CTGAGATACACTACTATACAAAGGAGCACAGTGGTTCAGTTCTTGGCATGGAGGATCCTCCTCTTACTCCTTTCACTGCTGACATGTCAGCATCTGGAGA TGGCATTGTTGCAGGTCTGATGAGAATGTTAACGGTTCAGCCACACCTCATTACCGATGAAGGCTACTTGAAGCGGTCGATACAGTATGCGATCGACTGT GGAGTCATTGACCAATGGTTGCTCGCAAGAACACGAGGGTTCCCTCTGCTGGAAGAGATGGATGAGGTAGAACCTGATCCTAGTGGTATAGTATCTATAA CTGAGCATGAGTCCAGAGTAGTTTTGTCACCAAGCCAGTAA
AA sequence Show only first row Show all	>Lus10037064 pacid=23152384 polypeptide=Lus10037064 locus=Lus10037064.g ID=Lus10037064.BGIv1.0 annot-version=v1.0 MAAGEGVASENGQVVAKKEVTAKRGRGRPRKKPVAADDDDDDDDEKKKNSEINYVKTRRKAFEEEEEDDDDDEEEEEEEKTVVVEKVKRVRKSRKKDNHV NNESELKSKPEFHTSDGVEQASSKVVSFVEEDSSDVEEEDEASFRSNAEDSSDGDLDFLDKDEQEEGISGTYGWPPLVCCFGAAQHAFVPSGRRANRLLN YEIHDRMRDAYWEPDRFVRAPGGCAGGVAVALASLGGKVAFMGKLGDDDFGQAMLYYMNVSKVQTRSVIVDGKRPTTVSRIRLAKRGRFRMICTRSSAED SLSKSEINIDLLREAKMFYFNTHPLLDRGMRSSTLYAMKISKKLGGVIFYDVNLPLPLWQSREETNEFIRDAWNHANVIEVTKQELEFLCGIEPTEEFDT RDNDDSKFVHYGKEVIDQLWHENLQVLFVTNGTSEIHYYTKEHSGSVLGMEDPPLTPFTADMSASGDGIVAGLMRMLTVQPHLITDEGYLKRSIQYAIDC GVIDQWLLARTRGFPLLEEMDEVEPDPSGIVSITEHESRVVLSPSQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69200		FLN2	fructokinase-like 2 (.1)		Lus10037064 [exp]	0	1
AT3G48730		GSA2	glutamate-1-semialdehyde 2,1-a...		Lus10029064 [exp]	6.4	0.8882
AT1G69200		FLN2	fructokinase-like 2 (.1)		Lus10036920 [exp]	7.6	0.8375
AT5G20630		ATGER3, GLP3A, ...	GERMIN-LIKE PROTEIN 3, ARABIDO...		Lus10022020 [exp]	11.4	0.8775
AT3G03630		CS26	cysteine synthase 26 (.1)		Lus10020342 [exp]	14.6	0.8780
AT3G02450			cell division protein ftsH, pu...		Lus10003049 [exp]	18.3	0.8757
AT5G20720		CHCPN10, ATCPN2...	CHLOROPLAST CHAPERONIN 10, cha...		Lus10016196 [exp]	18.6	0.8743
AT5G49910		CPHSC70-2EATSHO...	HEAT SHOCK PROTEIN 70-7, chlor...		Lus10017566 [exp]	23.8	0.7807
AT3G13490		ATKRS-2, OVA5	OVULE ABORTION 5, ARABIDOPSIS ...		Lus10010317 [exp]	28.6	0.8598
AT2G19870			tRNA/rRNA methyltransferase (S...		Lus10011129 [exp]	29.0	0.8552
AT3G57430		OTP84	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10001220 [exp]	31.2	0.8621

Compare expression of checked genes

Lus10037064 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.