Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13700 383 / 1e-135 PGL1 6-phosphogluconolactonase 1 (.1) AT5G24400 274 / 8e-92 PGL3, EMB2024 6-PHOSPHOGLUCONOLACTONASE 3, EMBRYO DEFECTIVE 2024, NagB/RpiA/CoA transferase-like superfamily protein (.1) AT3G49360 237 / 3e-78 PGL2 6-phosphogluconolactonase 2 (.1) AT5G24420 227 / 2e-74 PGL5 6-phosphogluconolactonase 5 (.1) AT5G24410 218 / 9e-71 PGL4 6-phosphogluconolactonase 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036919 [exp] 521 / 0 AT1G13700 383 / 1e-135 6-phosphogluconolactonase 1 (.1) Lus10022352 [exp] 281 / 2e-94 AT5G24400 382 / 2e-133 6-PHOSPHOGLUCONOLACTONASE 3, EMBRYO DEFECTIVE 2024, NagB/RpiA/CoA transferase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G157200 [exp] 444 / 9e-160 AT1G13700 383 / 1e-135 6-phosphogluconolactonase 1 (.1) Potri.008G097200 [exp] 436 / 8e-156 AT1G13700 386 / 6e-136 6-phosphogluconolactonase 1 (.1) Potri.012G024400 [exp] 297 / 6e-101 AT5G24400 384 / 3e-134 6-PHOSPHOGLUCONOLACTONASE 3, EMBRYO DEFECTIVE 2024, NagB/RpiA/CoA transferase-like superfamily protein (.1) Potri.015G007200 [exp] 296 / 2e-100 AT5G24400 395 / 1e-138 6-PHOSPHOGLUCONOLACTONASE 3, EMBRYO DEFECTIVE 2024, NagB/RpiA/CoA transferase-like superfamily protein (.1) Potri.015G007300 [exp] 277 / 6e-94 AT5G24400 357 / 2e-124 6-PHOSPHOGLUCONOLACTONASE 3, EMBRYO DEFECTIVE 2024, NagB/RpiA/CoA transferase-like superfamily protein (.1) Potri.012G020100 [exp] 187 / 4e-59 AT5G24400 229 / 9e-75 6-PHOSPHOGLUCONOLACTONASE 3, EMBRYO DEFECTIVE 2024, NagB/RpiA/CoA transferase-like superfamily protein (.1) Potri.015G008401 [exp] 58 / 4e-11 AT5G24400 77 / 3e-18 6-PHOSPHOGLUCONOLACTONASE 3, EMBRYO DEFECTIVE 2024, NagB/RpiA/CoA transferase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0246 [flax] [poplar] ISOCOT_Fold PF01182 [flax] [poplar] Glucosamine_iso Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase
Representative CDS sequence Show only first row Show all	>Lus10037065 pacid=23152514 polypeptide=Lus10037065 locus=Lus10037065.g ID=Lus10037065.BGIv1.0 annot-version=v1.0 ATGGCGCTTGCTGGGGATGAAAGAGGGGAATTGAGGGTTCATGAGAGTTTGGATGAGCTCAGCACTGATTTGGCAGACTATATCTCTGAGCTATCTGAGG CTTCTGTCAAAGAGAGAGGCGACTTTGCCATTGCCTTGTCTGGTGGTTCTCTCATTGGTCTAATGGGGAAACTGTGTGAAGCTCCTTATAGCAAGACTGT GGACTGGTCTAAATGGTACATATTCTGGGTCGATGAACGTGTGGTTTCAAAGAATCACGCTGATAGCAACTATAAGCTTGCAAAAGATGGGCTCTTGTCC AAGGTCCCAATTGTTCCGAGCCATGTCCACTCGATAAACGACTCGGTATCAGCAGAGGAGGCAGCGGATGATTACGAATTCGCCATCCGGCAGCTGGTGA AAACTAGGACAGTTAATGTATCCGACATAAGTGACTGCCCGAAGTTCGATCTCATACTTCTAGGCATGGGACCAGATGGCCATGTTGCATCCCTATTCCC TAACCACCCGGCACTCAACGAAAAAGATGAATGGGTCACCTTCGTCACCGATTCGCCAAAGCCTCCACCGGAGAGAATCACATTCACTCTCCCTGTCATC AACTCGGCATCCAATGTAGCCATAGTCGCGACAGGCGAGAGCAAAGCGGATGCTTTACACCTGGCAATCGAAGGATCCGATGGCTCGTTGCTGCTGCCTG CACGAATGGTGCAGCCGATGAAGGGGAATCTGGTTTGGTTTTTGGACAAGCCGGCTGCATCGAAACTCGAAGGCTCTAAACTCTGA
AA sequence Show only first row Show all	>Lus10037065 pacid=23152514 polypeptide=Lus10037065 locus=Lus10037065.g ID=Lus10037065.BGIv1.0 annot-version=v1.0 MALAGDERGELRVHESLDELSTDLADYISELSEASVKERGDFAIALSGGSLIGLMGKLCEAPYSKTVDWSKWYIFWVDERVVSKNHADSNYKLAKDGLLS KVPIVPSHVHSINDSVSAEEAADDYEFAIRQLVKTRTVNVSDISDCPKFDLILLGMGPDGHVASLFPNHPALNEKDEWVTFVTDSPKPPPERITFTLPVI NSASNVAIVATGESKADALHLAIEGSDGSLLLPARMVQPMKGNLVWFLDKPAASKLEGSKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13700		PGL1	6-phosphogluconolactonase 1 (....		Lus10037065 [exp]	0	1
AT1G23800		ALDH2B7	aldehyde dehydrogenase 2B7 (.1...		Lus10029166 [exp]	2.4	0.9314
AT3G11690			unknown protein		Lus10016197 [exp]	2.4	0.9153
AT2G22780		PMDH1	peroxisomal NAD-malate dehydro...		Lus10039642 [exp]	8.2	0.8579
AT2G43330		ATINT1	inositol transporter 1 (.1)		Lus10027026 [exp]	8.7	0.9086
AT1G58030		CAT2	cationic amino acid transporte...		Lus10020322 [exp]	17.0	0.8754
AT1G74780			Nodulin-like / Major Facilitat...		Lus10036663 [exp]	19.0	0.8322
AT1G11910		ATAPA1, APA1	aspartic proteinase A1 (.1)		Lus10021552 [exp]	21.8	0.8671
AT1G12440			A20/AN1-like zinc finger famil...		Lus10008912 [exp]	22.1	0.8869
AT3G10470	C2H2ZnF		C2H2-type zinc finger family p...		Lus10021409 [exp]	22.4	0.8456
AT2G22780		PMDH1	peroxisomal NAD-malate dehydro...		Lus10011587 [exp]	23.0	0.8503

Compare expression of checked genes

Lus10037065 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.