Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60980 225 / 4e-68 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) AT2G03640 209 / 3e-62 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain AT3G25150 199 / 7e-58 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) AT1G69250 184 / 8e-53 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) AT1G13730 142 / 3e-37 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1) AT5G48650 137 / 4e-35 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1) AT3G07250 84 / 1e-16 nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein (.1) AT3G55540 79 / 5e-16 nuclear transport factor 2 (NTF2) family protein (.1) AT5G43960 79 / 2e-15 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) AT1G27970 50 / 2e-07 NTF2B nuclear transport factor 2B (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036918 [exp] 691 / 0 AT2G03640 250 / 4e-78 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain Lus10026668 [exp] 406 / 9e-138 AT2G03640 255 / 5e-80 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain Lus10004644 [exp] 397 / 3e-134 AT2G03640 253 / 2e-79 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain Lus10022765 [exp] 212 / 9e-63 AT3G25150 408 / 1e-138 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) Lus10003144 [exp] 204 / 2e-59 AT3G25150 385 / 2e-129 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) Lus10025906 [exp] 207 / 3e-59 AT3G25150 363 / 4e-118 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) Lus10022873 [exp] 140 / 1e-36 AT5G43960 377 / 1e-127 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) Lus10014469 [exp] 118 / 6e-29 AT5G43960 156 / 4e-43 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) Lus10023722 [exp] 103 / 3e-23 AT5G43960 266 / 2e-83 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G096700 [exp] 298 / 2e-96 AT2G03640 219 / 3e-66 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain Potri.010G157800 [exp] 277 / 1e-87 AT1G13730 219 / 4e-66 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1) Potri.015G058700 [exp] 236 / 7e-72 AT5G60980 382 / 9e-129 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) Potri.017G094600 [exp] 170 / 3e-47 AT5G60980 286 / 6e-92 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) Potri.002G246600 [exp] 156 / 1e-41 AT3G25150 374 / 8e-125 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) Potri.014G192900 [exp] 115 / 2e-27 AT5G43960 392 / 3e-133 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) Potri.002G257000 [exp] 110 / 8e-26 AT5G43960 402 / 3e-137 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) Potri.010G065500 [exp] 109 / 1e-25 AT5G43960 310 / 3e-101 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) Potri.011G025500 [exp] 60 / 1e-10 AT1G11570 171 / 5e-56 NTF2-like (.1.2) Potri.003G170800 [exp] 57 / 5e-10 AT1G27970 230 / 1e-79 nuclear transport factor 2B (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CL0051 [flax] [poplar] NTF2 PF02136 [flax] [poplar] NTF2 Nuclear transport factor 2 (NTF2) domain
Representative CDS sequence Show only first row Show all	>Lus10037066 pacid=23152570 polypeptide=Lus10037066 locus=Lus10037066.g ID=Lus10037066.BGIv1.0 annot-version=v1.0 ATGGCGGAAGAAGCTGTTCCCACTTTCAATGCTCAGCTGGTGGGCAATGCCTTTGTGGATCAGTACTACAACGTGCTCTACAAGAACCCTGAAATGGTGC ATAGGTTTTACATTGACTCGAGTGAAGTGAGCAGGCCTGATTCAGATGGCTCCATGTCCTCCGCCTCCACAATGACTGGCATCAACGATCTGATCCTTTC ATTGGATTACAAAGATTGCGAGGTCCAGATTCTGACAGCTGATGCTCAAAAATCTTTTGGGGGTGGAGTTATAGTTCTGGTGACTGGTTTTCTCACTGGG AAGGATGAGATAAGAAGAATGTTTACCCAATTGTTCTTTTTGGCTCCACAACCAGATAATGGGTTCTTTGTCTTGAATGATGTTCTGAGATACTTGGAAG AAGAAGAGTTGTCAACCGTAAAGGTTAGCAATGGTCCAGCTGATTCTGCTCCAGTTGCTGCTGTTACCACTGTTCCAGTTGTAGAGCCAACCCCCGTCTC TGATAATTCAATGGTGGAGAAAGAAGCCACCATTTTGGCTGAGGATGTTCCCATCCAATCTAATAATGAAGCTAGTTTTCAGCTGGAGAACGGCAATATT GCTGCTTCCGAGAAAGAGTTTGTACCCAATAATGTGGCTGAGACACCACAGAGTGTTGCTCCTCCAGCGACAGTAGTTGCAACACGGGAGGCAGATCACA AACCCTCTGAACCGGCTGTTCCTGCTTCTAAGGAGGATGCTCCCAAGAAGTCTTATGCTTCAATTGCGCATGCATTGAACTTCAAGAACCAACCTTTCCA GCAAAAACCCAAGCCAGTGGTTCGTGCTCCCATTCCTGCTGCTACACCATCGGCAGAGGCTGCTCCTGCACCTGGACCTGCACCTGCACCTGCACCAGCT CCAGCTCCAGCTCCTCGTCCTGCAAGAAGCAATTCTTTTGAGAAGAACAATTACACAGTGAAGGGACACTCTATCTTCGTGGCCAATCTACCCATGGATG CAACTCCGCAACAACTCATTGAGACTTTCCAGAAATTCGGTACTATCAAGCCCACTGGCGTCCAAGTCAGAAGTTACAAGCAAGAGAAGAATTGCTTCGG ATTCGTCGAGCTCGCAACAGCTGCTGCCATGGAGAACGCCCTTCAGGTTGCAACAATAATGATCGGGAACCGTGAAGCTCATATTGAGAAGAAGAAAGCT GGAGGCGAAGGCGGCAGGTTCCCGCCTAGAAGGGGCGGTTTCAGGGAGGGCTTCAGGGAGGACGGTGGGTTCAGAGGCGGCCGCGGTGGAAACTACGGTG GAGGACGTGGTGGTGGTTATGTGAAGAATGATGTTGAGAATAACTACAACGGTCCAGCCAGGGGACGCAATCCGGAGGGTAATCAGAGAGTGTATCAGAA CGGAGGCGGAAGGGGGGGCGGACGTCAATCTAGACCGGCGCCTCAACAAGCTGCTGCGGAGGCCGTTGACGGCGGGAAGAATTAA
AA sequence Show only first row Show all	>Lus10037066 pacid=23152570 polypeptide=Lus10037066 locus=Lus10037066.g ID=Lus10037066.BGIv1.0 annot-version=v1.0 MAEEAVPTFNAQLVGNAFVDQYYNVLYKNPEMVHRFYIDSSEVSRPDSDGSMSSASTMTGINDLILSLDYKDCEVQILTADAQKSFGGGVIVLVTGFLTG KDEIRRMFTQLFFLAPQPDNGFFVLNDVLRYLEEEELSTVKVSNGPADSAPVAAVTTVPVVEPTPVSDNSMVEKEATILAEDVPIQSNNEASFQLENGNI AASEKEFVPNNVAETPQSVAPPATVVATREADHKPSEPAVPASKEDAPKKSYASIAHALNFKNQPFQQKPKPVVRAPIPAATPSAEAAPAPGPAPAPAPA PAPAPRPARSNSFEKNNYTVKGHSIFVANLPMDATPQQLIETFQKFGTIKPTGVQVRSYKQEKNCFGFVELATAAAMENALQVATIMIGNREAHIEKKKA GGEGGRFPPRRGGFREGFREDGGFRGGRGGNYGGGRGGGYVKNDVENNYNGPARGRNPEGNQRVYQNGGGRGGGRQSRPAPQQAAAEAVDGGKN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G03640			Nuclear transport factor 2 (NT...		Lus10037066 [exp]	0	1
AT4G27585			SPFH/Band 7/PHB domain-contain...		Lus10032909 [exp]	1.0	0.9106
AT5G49020		ATPRMT4A	ARABIDOPSIS THALIANA PROTEIN A...		Lus10034172 [exp]	1.4	0.9005
AT5G43960			Nuclear transport factor 2 (NT...		Lus10022873 [exp]	2.4	0.8965
AT2G16595			Translocon-associated protein ...		Lus10012169 [exp]	4.5	0.8693
AT3G22330		ATRH53, PMH2	putative mitochondrial RNA hel...		Lus10031012 [exp]	6.5	0.8755
AT1G73240			unknown protein		Lus10026211 [exp]	8.5	0.8759
AT3G22330		ATRH53, PMH2	putative mitochondrial RNA hel...		Lus10035410 [exp]	11.0	0.8429
AT4G20980			Eukaryotic translation initiat...		Lus10011171 [exp]	11.7	0.8819
AT3G06720		IMPA1, IMPA-1, ...	importin alpha isoform 1 (.1.2...		Lus10037722 [exp]	13.5	0.8364
AT1G18650		PDCB3	plasmodesmata callose-binding ...		Lus10004650 [exp]	17.5	0.8474

Compare expression of checked genes

Lus10037066 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.