Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26370 902 / 0 RID1 RNA helicase family protein (.1) AT1G32490 540 / 2e-179 EMB2733, ESP3 ENHANCED SILENCING PHENOTYPE 3, EMBRYO DEFECTIVE 2733, RNA helicase family protein (.1.2) AT2G35340 536 / 4e-178 MEE29 maternal effect embryo arrest 29, helicase domain-containing protein (.1) AT3G26560 533 / 2e-175 ATP-dependent RNA helicase, putative (.1) AT2G47250 490 / 7e-164 RNA helicase family protein (.1) AT3G62310 485 / 4e-162 RNA helicase family protein (.1) AT4G18465 482 / 3e-161 RNA helicase family protein (.1) AT5G13010 471 / 6e-151 EMB3011 embryo defective 3011, RNA helicase family protein (.1) AT4G16680 435 / 1e-143 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G27900 408 / 1e-132 RNA helicase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036917 [exp] 882 / 0 AT1G26370 650 / 0.0 RNA helicase family protein (.1) Lus10036783 [exp] 533 / 7e-175 AT3G26560 1790 / 0.0 ATP-dependent RNA helicase, putative (.1) Lus10031647 [exp] 518 / 5e-170 AT1G32490 1545 / 0.0 ENHANCED SILENCING PHENOTYPE 3, EMBRYO DEFECTIVE 2733, RNA helicase family protein (.1.2) Lus10037145 [exp] 512 / 6e-168 AT3G26560 1529 / 0.0 ATP-dependent RNA helicase, putative (.1) Lus10033690 [exp] 489 / 4e-157 AT1G32490 1399 / 0.0 ENHANCED SILENCING PHENOTYPE 3, EMBRYO DEFECTIVE 2733, RNA helicase family protein (.1.2) Lus10005261 [exp] 472 / 2e-156 AT3G62310 1300 / 0.0 RNA helicase family protein (.1) Lus10025127 [exp] 414 / 1e-134 AT4G18465 1033 / 0.0 RNA helicase family protein (.1) Lus10036991 [exp] 410 / 4e-133 AT1G27900 1089 / 0.0 RNA helicase family protein (.1) Lus10015812 [exp] 409 / 4e-133 AT1G27900 1097 / 0.0 RNA helicase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G096800 [exp] 1065 / 0 AT1G26370 1019 / 0.0 RNA helicase family protein (.1) Potri.015G024400 [exp] 533 / 3e-175 AT3G26560 1768 / 0.0 ATP-dependent RNA helicase, putative (.1) Potri.015G008700 [exp] 529 / 4e-175 AT1G32490 1541 / 0.0 ENHANCED SILENCING PHENOTYPE 3, EMBRYO DEFECTIVE 2733, RNA helicase family protein (.1.2) Potri.012G034200 [exp] 523 / 6e-171 AT3G26560 1744 / 0.0 ATP-dependent RNA helicase, putative (.1) Potri.002G192500 [exp] 481 / 2e-160 AT3G62310 1276 / 0.0 RNA helicase family protein (.1) Potri.014G117900 [exp] 481 / 3e-160 AT3G62310 1252 / 0.0 RNA helicase family protein (.1) Potri.010G172500 [exp] 484 / 2e-155 AT5G13010 1715 / 0.0 embryo defective 3011, RNA helicase family protein (.1) Potri.004G052700 [exp] 462 / 1e-153 AT4G18465 1092 / 0.0 RNA helicase family protein (.1) Potri.010G057200 [exp] 405 / 2e-131 AT1G27900 1077 / 0.0 RNA helicase family protein (.1) Potri.005G071500 [exp] 285 / 6e-82 AT5G10370 1979 / 0.0 helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase CL0023 [flax] [poplar] PF04408 [flax] [poplar] HA2 Helicase associated domain (HA2)
Representative CDS sequence Show only first row Show all	>Lus10037067 pacid=23152268 polypeptide=Lus10037067 locus=Lus10037067.g ID=Lus10037067.BGIv1.0 annot-version=v1.0 ATGCCTTCAGTGGCGCAAAACGGCAGCTTAATTACTGCTCGGACTGCAGACTTCAAGCAGTCCAATCACAACTCCTCGGATGCCTTTGCCAGAAGAGAAA GGATTCGGAAGCAGCGAGAGTCTCTTCCGATTGCGTCCGTGAAGGAGCGACTGATTGAGGAGGTTAAGAAGCACGATGTTTTGATCATCGTTGGTGAGAC TGGGAGTGGGAAAACAACTCAAATACCTCAGTTTCTATTCAGTGCTGGCTTCTGTCGAGATGGAAAGACTGTTGGTGTCACGCAGCCAAGGCGTGTGGCT GCTGTCACTGTTGCGAAGCGAGTTTCGGAGGAATGTGGTGTTGAATTGGGGCAAAAGGTTGGGTACTCAATTAGGTTTGACGATAGGACTTCCTCTGCAA CGAGGATTAAGTACATGACTGATGGGCTGCTGTTGAGGGAAGCATTACTTGACCCTTATCTATCGAGATACTCGGTCATCATTGTAGACGAAGCTCACGA AAGAACTGTACACACTGATGTATTGTTGGGCCTGCTAAAAGATGTGCAAAAAGCTCGGGCAAAAGCAGGCAGTGTTAATGTCGCTGCTAGTAATAAGAAT GCTACTAATGGAATATTGCCGGAAAAAGAAGGCACTAGTCAATTGGCCAATTTTCTCAAGCAATCACAAGCCAAGAAATTCCCTCCTTTGAAGCTAATCA TTATGTCTGCCAGTTTAGATGCTCGAGTGTTTTCTGAGTACTTCGGTGGTGCTAGAGCTGTCCACGTTCAAGGCCGGCAACATCCTGTTGACATACTTTA TACTCTTCAACCTGAAAAAGATTATGTTGATGCAGCCTTAGTTACCATATTTCAGATTCATTTGGAGGAGCACCCTGGTGATGTACTTGTATTCTTGACT GGACAAGAAGAGATTGAAGCAGTTGAGAGACTTGTTCAGGAACGACTTCATTCACTGCCTGAAGCCAGTCGAAAGCTGTTAACAGTTCCAATATTCTCAT CCCTTCCATCAGAGAAGCAAATGCGTGTGTTTGCTCCAGCCCCTGATGGGTACCGTAAGGTGGTATTATCAACAAATATAGCTGAGACCTCCGTGACAAT ACCTGGAATCAAATATGTGATTGATCCTGGATTTGTAAAAGCACGGACTTATAACCCATCTAAGGGGATGGAGTCTTTGATTATTATTCCAACTTCAAAA GCTCAAGCTCTTCAAAGGAGTGGTCGCGCTGGGCGAGAAGGGCATGGGAAATGCTTCCGTCTTTACCCTGAGAGTGAATTTGAGAAACTTGAGGATTCAA CAAAACCAGAAATCAAGCGGTGCAACCTCTCGAATGTTATTTTACAGCTTAAAGCACTTGGTGTTGATGACATTTTCGGGTTTGACTTCATTGAAAAACC ATCTAGGGCAGCTATTGTCAAGTCATTGGAGCACTTGTTTCTGCTGGGTGCTTTAACAGATGAGTGTAAGCTATCTGATCCAGTGGGGCATCGGATGGCT CGCCTTCCTTTGGACCCTATTTATTCTAAAGCTCTTATCCTAGCCAGCGAATTCAACTGTTTGGAAGAAATGTTGATTACCGTTGCAATGCTCTCTGTGG ACTCCATCTTCTATATTCCGCGTGAAAAGATAGATGAATCAAGAAAAGCAGCTAAATGCTTCGCGAGTCCCGATGGGGACCACATTACTCTAATAAATGT ATATCGAGCAGCAAATGATCTTTTGCAAAAAAGTAACAATGTTCGTATGGATAAAAGTGAGAAAAATATAAAAGGCAACGGTGAAAAGGTTTTCAAAAGA TGGTGCAAGGAAAATTTTATCAATGCTCGATCTGTGAAGCATGCACGGGATATACACAGTCAAATTCAGGGACATATTGAACAAATGGGTCTTCGGATTA CTTCTTGTGGAGATGATATGCTCGAGTTCTGCAGATGTCTTTCTGCGTCATTTTTTATTAATGCAGCGTTGAAGCAGCCGGATGGAACTTACAGGGTTGA AATAGGGAGGTTGAGGAAGTTTCTGCAATATCCCTTCGGTCTAGGTGCAAAGGAGAAGTTTGCTTTATTTAAAAGTTTCCTGTGGTCGATTGGATTATTA GCAACAACGTGTTTAAGACAGAGGGACTCGTTGAAGTATTCTCCAGACACTATTAAGCAAACTTGGATATTGCACTAA
AA sequence Show only first row Show all	>Lus10037067 pacid=23152268 polypeptide=Lus10037067 locus=Lus10037067.g ID=Lus10037067.BGIv1.0 annot-version=v1.0 MPSVAQNGSLITARTADFKQSNHNSSDAFARRERIRKQRESLPIASVKERLIEEVKKHDVLIIVGETGSGKTTQIPQFLFSAGFCRDGKTVGVTQPRRVA AVTVAKRVSEECGVELGQKVGYSIRFDDRTSSATRIKYMTDGLLLREALLDPYLSRYSVIIVDEAHERTVHTDVLLGLLKDVQKARAKAGSVNVAASNKN ATNGILPEKEGTSQLANFLKQSQAKKFPPLKLIIMSASLDARVFSEYFGGARAVHVQGRQHPVDILYTLQPEKDYVDAALVTIFQIHLEEHPGDVLVFLT GQEEIEAVERLVQERLHSLPEASRKLLTVPIFSSLPSEKQMRVFAPAPDGYRKVVLSTNIAETSVTIPGIKYVIDPGFVKARTYNPSKGMESLIIIPTSK AQALQRSGRAGREGHGKCFRLYPESEFEKLEDSTKPEIKRCNLSNVILQLKALGVDDIFGFDFIEKPSRAAIVKSLEHLFLLGALTDECKLSDPVGHRMA RLPLDPIYSKALILASEFNCLEEMLITVAMLSVDSIFYIPREKIDESRKAAKCFASPDGDHITLINVYRAANDLLQKSNNVRMDKSEKNIKGNGEKVFKR WCKENFINARSVKHARDIHSQIQGHIEQMGLRITSCGDDMLEFCRCLSASFFINAALKQPDGTYRVEIGRLRKFLQYPFGLGAKEKFALFKSFLWSIGLL ATTCLRQRDSLKYSPDTIKQTWILH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G26370		RID1	RNA helicase family protein (....		Lus10037067 [exp]	0	1
AT2G39810		HOS1	HIGH EXPRESSION OF OSMOTICALLY...		Lus10007854 [exp]	1.0	0.9147
AT1G06560			NOL1/NOP2/sun family protein (...		Lus10007337 [exp]	6.3	0.9084
AT2G17510		EMB2763	EMBRYO DEFECTIVE 2763, ribonuc...		Lus10029500 [exp]	7.5	0.9104
AT5G25757			RNA polymerase I-associated fa...		Lus10037897 [exp]	8.9	0.9121
AT5G56900	C3HZnF		CwfJ-like family protein / zin...		Lus10021589 [exp]	9.2	0.9042
AT1G79150			binding (.1)		Lus10034234 [exp]	10.2	0.9061
AT1G51350			ARM repeat superfamily protein...		Lus10002562 [exp]	11.1	0.8831
AT5G57990		UBP23	ubiquitin-specific protease 23...		Lus10035825 [exp]	12.0	0.9101
AT2G28450	C3HZnF		zinc finger (CCCH-type) family...		Lus10041301 [exp]	16.2	0.8886
AT3G52140			tetratricopeptide repeat (TPR)...		Lus10015708 [exp]	16.9	0.9029

Compare expression of checked genes

Lus10037067 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.