Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69240 367 / 8e-125 RHS9, ATMES15 ROOT HAIR SPECIFIC 9, ARABIDOPSIS THALIANA METHYL ESTERASE 15, methyl esterase 15 (.1) AT1G26360 353 / 2e-119 ATMES13, SP1L1 ARABIDOPSIS THALIANA METHYL ESTERASE 13, methyl esterase 13 (.1) AT3G29770 346 / 2e-117 ATMES11 ARABIDOPSIS THALIANA METHYL ESTERASE 11, methyl esterase 11 (.1) AT1G33990 286 / 1e-94 ATMES14 methyl esterase 14 (.1) AT4G09900 284 / 1e-93 ATMES12 ARABIDOPSIS THALIANA METHYL ESTERASE 12, methyl esterase 12 (.1) AT5G58310 170 / 2e-50 ATMES18 ARABIDOPSIS THALIANA METHYL ESTERASE 18, methyl esterase 18 (.1) AT3G10870 163 / 2e-47 ATMES17, MES17 ARABIDOPSIS THALIANA METHYL ESTERASE 17, methyl esterase 17 (.1) AT4G16690 156 / 3e-45 ATMES16 ARABIDOPSIS THALIANA METHYL ESTERASE 16, methyl esterase 16 (.1) AT2G23610 153 / 5e-44 ATMES3 ARABIDOPSIS THALIANA METHYL ESTERASE 3, methyl esterase 3 (.1) AT2G23560 151 / 4e-43 ATMES7 ARABIDOPSIS THALIANA METHYL ESTERASE 7, methyl esterase 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036917 [exp] 522 / 0 AT1G26370 650 / 0.0 RNA helicase family protein (.1) Lus10030707 [exp] 370 / 2e-126 AT3G29770 494 / 4e-175 ARABIDOPSIS THALIANA METHYL ESTERASE 11, methyl esterase 11 (.1) Lus10013193 [exp] 364 / 3e-124 AT3G29770 493 / 8e-175 ARABIDOPSIS THALIANA METHYL ESTERASE 11, methyl esterase 11 (.1) Lus10005298 [exp] 294 / 2e-97 AT4G09900 541 / 0.0 ARABIDOPSIS THALIANA METHYL ESTERASE 12, methyl esterase 12 (.1) Lus10003511 [exp] 287 / 9e-95 AT4G09900 526 / 0.0 ARABIDOPSIS THALIANA METHYL ESTERASE 12, methyl esterase 12 (.1) Lus10009489 [exp] 250 / 3e-81 AT4G09900 378 / 2e-132 ARABIDOPSIS THALIANA METHYL ESTERASE 12, methyl esterase 12 (.1) Lus10015532 [exp] 167 / 4e-49 AT2G23600 240 / 2e-79 ARABIDOPSIS THALIANA METHYL ESTERASE 2, ARABIDOPSIS METHYL ESTERASE 8, acetone-cyanohydrin lyase (.1) Lus10022467 [exp] 149 / 3e-42 AT3G50440 238 / 2e-78 ARABIDOPSIS THALIANA METHYL ESTERASE 10, methyl esterase 10 (.1) Lus10029011 [exp] 147 / 2e-41 AT3G10870 293 / 1e-99 ARABIDOPSIS THALIANA METHYL ESTERASE 17, methyl esterase 17 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G096900 [exp] 379 / 2e-130 AT1G26360 379 / 2e-129 ARABIDOPSIS THALIANA METHYL ESTERASE 13, methyl esterase 13 (.1) Potri.017G096900 [exp] 369 / 1e-126 AT3G29770 463 / 2e-163 ARABIDOPSIS THALIANA METHYL ESTERASE 11, methyl esterase 11 (.1) Potri.004G116500 [exp] 361 / 2e-123 AT3G29770 499 / 1e-177 ARABIDOPSIS THALIANA METHYL ESTERASE 11, methyl esterase 11 (.1) Potri.019G077400 [exp] 295 / 8e-98 AT4G09900 547 / 0.0 ARABIDOPSIS THALIANA METHYL ESTERASE 12, methyl esterase 12 (.1) Potri.013G104700 [exp] 290 / 4e-96 AT4G09900 541 / 0.0 ARABIDOPSIS THALIANA METHYL ESTERASE 12, methyl esterase 12 (.1) Potri.009G107500 [exp] 174 / 8e-52 AT3G50440 240 / 1e-78 ARABIDOPSIS THALIANA METHYL ESTERASE 10, methyl esterase 10 (.1) Potri.007G036800 [exp] 171 / 5e-50 AT2G23560 230 / 2e-74 ARABIDOPSIS THALIANA METHYL ESTERASE 7, methyl esterase 7 (.1) Potri.009G107200 [exp] 167 / 3e-49 AT3G50440 244 / 4e-80 ARABIDOPSIS THALIANA METHYL ESTERASE 10, methyl esterase 10 (.1) Potri.019G131100 [exp] 163 / 1e-47 AT3G10870 323 / 9e-112 ARABIDOPSIS THALIANA METHYL ESTERASE 17, methyl esterase 17 (.1) Potri.007G036700 [exp] 160 / 7e-47 AT2G23610 244 / 8e-81 ARABIDOPSIS THALIANA METHYL ESTERASE 3, methyl esterase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00561 [flax] [poplar] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10037068 pacid=23152364 polypeptide=Lus10037068 locus=Lus10037068.g ID=Lus10037068.BGIv1.0 annot-version=v1.0 ATGGGGAACGCGATAAGATGCATATCGGGCGACCCAGAAGGAAAGAAACGCTCTTTACCTTCTTTCAAGGGGAAACCTGGCCTCTTCTCTTCTCTTTCTT TTCAGAAGAGGAAGAAGCGAGATCTTAGTTGCGAGACAAATGAAGATGACTCCATACGAGATCTTAGCTTCATCTCATCAGATAGCGCTCTTAATGCAGC TTTTCTCCAGCGCCTTTATCGGAACGGCTCCCCTGCGTTCCGAAGAACAGCTTCTGAGGCCACAGCAGATCGAAGAAAGCACGCTTCTTTAAAGAAAAGC TCAAGTTCGAGACTGCGCTCTCATGATGATCATTCCATTGAAGCGCATCAGCTTGTCAACCAGGAAATAAAGATCGAAGAGCTTGAAACTAGCCATTTCG TTCTTGTTCATGGAGGTGGTTTTGGAGCCTGGTGCTGGTACAAAACTGTGGCGTACCTTCAAGAAGCCGGGTTCAGGGTTGATGCAGTGAACTTAATTGG TTTTGGTGCCAGTTTATCTGATTCAAATAACATCTGCACTCTAGCTCAATATGTAAAGCCACTTTCCGACATTCTTGATAAGCTTGGCAAAGAGGAAAAG GTGATTGTTGTCAGCCATGATCTCGGAGGTGCTTGTATCTCGTATGTTATGGAACAACATCCTTCGAAGATCTCGAAATCTGTTTTTGTTGCATCTACGA TGATGTCAAATGGTCAGAGCGCACTCGATCTACTGTCCCAAACCCAACAGGCAGATTCTGAGGATCCCATGGAAAAAGCTTACCTTTTTCTCTACGGCAA TGGCAAAGAAAACCCTCCAACTTCAATTGATCTGGACAAGGAGATCTGCAGAGACCTGTTATTCCACCAGAGTTCCACCAGAGACAAAGCACTGGCAGCA GTGTCGATGAGGTCGATCCCATTCGGACCAATCGTGGAGAAACTCGTCCTCTCCAACAAAAACTACGGATCCATCAGGAGGTTCTACATTAAAACACAAG ATGATCGTGCAATCCCCTCATCACAGCAGGAAGCCATGATTCAATCTAACCCTCCAGAGCAGGTCTTCCAAATCAAGGGCTCCGATCATGCCCCGTTCTT CTCCAAGCCGCAGTCTTTGCACAGGATATTGTTACAGATCTCGCAGATTTCGTGA
AA sequence Show only first row Show all	>Lus10037068 pacid=23152364 polypeptide=Lus10037068 locus=Lus10037068.g ID=Lus10037068.BGIv1.0 annot-version=v1.0 MGNAIRCISGDPEGKKRSLPSFKGKPGLFSSLSFQKRKKRDLSCETNEDDSIRDLSFISSDSALNAAFLQRLYRNGSPAFRRTASEATADRRKHASLKKS SSSRLRSHDDHSIEAHQLVNQEIKIEELETSHFVLVHGGGFGAWCWYKTVAYLQEAGFRVDAVNLIGFGASLSDSNNICTLAQYVKPLSDILDKLGKEEK VIVVSHDLGGACISYVMEQHPSKISKSVFVASTMMSNGQSALDLLSQTQQADSEDPMEKAYLFLYGNGKENPPTSIDLDKEICRDLLFHQSSTRDKALAA VSMRSIPFGPIVEKLVLSNKNYGSIRRFYIKTQDDRAIPSSQQEAMIQSNPPEQVFQIKGSDHAPFFSKPQSLHRILLQISQIS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69240		RHS9, ATMES15	ROOT HAIR SPECIFIC 9, ARABIDOP...		Lus10037068 [exp]	0	1
AT2G17580			Polynucleotide adenylyltransfe...		Lus10035995 [exp]	9.6	0.7621
AT5G14090			unknown protein		Lus10037042 [exp]	9.7	0.8223
					Lus10012064 [exp]	10.8	0.8077
AT5G59320		LTP3	lipid transfer protein 3 (.1)		Lus10024201 [exp]	14.4	0.8206
AT5G05190			Protein of unknown function (D...		Lus10034250 [exp]	17.2	0.7561
AT3G54040			PAR1 protein (.1)		Lus10017196 [exp]	19.1	0.7693
AT1G23550		SRO2	similar to RCD one 2 (.1)		Lus10029152 [exp]	21.4	0.7781
AT1G27990			unknown protein		Lus10015763 [exp]	22.2	0.8047
AT5G59320		LTP3	lipid transfer protein 3 (.1)		Lus10009911 [exp]	23.2	0.7939
					Lus10023082 [exp]	23.4	0.7740

Compare expression of checked genes

Lus10037068 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.