Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69220 826 / 0 SIK1 Protein kinase superfamily protein (.1.2) AT1G53165 258 / 4e-75 ATMAP4KALPHA1 ,ATMAP4K ALPHA1 Protein kinase superfamily protein (.1.2.3) AT3G15220 258 / 7e-75 Protein kinase superfamily protein (.1) AT4G24100 199 / 1e-53 Protein kinase superfamily protein (.1) AT4G10730 197 / 2e-53 Protein kinase superfamily protein (.1) AT1G79640 196 / 8e-53 Protein kinase superfamily protein (.1.2) AT5G14720 192 / 1e-51 Protein kinase superfamily protein (.1) AT1G70430 185 / 8e-50 Protein kinase superfamily protein (.1) AT3G13530 189 / 3e-49 MAPKKK7, MAP3KE1 MAP3K EPSILON PROTEIN KINASE, mitogen-activated protein kinase kinase kinase 7 (.1) AT1G23700 174 / 9e-47 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036915 [exp] 1370 / 0 AT1G69220 917 / 0.0 Protein kinase superfamily protein (.1.2) Lus10042862 [exp] 228 / 8e-64 AT3G15220 827 / 0.0 Protein kinase superfamily protein (.1) Lus10028163 [exp] 215 / 5e-59 AT1G53165 769 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10014542 [exp] 203 / 6e-55 AT5G14720 895 / 0.0 Protein kinase superfamily protein (.1) Lus10001677 [exp] 199 / 5e-53 AT4G10730 892 / 0.0 Protein kinase superfamily protein (.1) Lus10000878 [exp] 196 / 1e-52 AT4G24100 887 / 0.0 Protein kinase superfamily protein (.1) Lus10017326 [exp] 197 / 2e-52 AT4G10730 883 / 0.0 Protein kinase superfamily protein (.1) Lus10033230 [exp] 195 / 3e-52 AT4G24100 895 / 0.0 Protein kinase superfamily protein (.1) Lus10026108 [exp] 191 / 3e-51 AT1G79640 789 / 0.0 Protein kinase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G157400 [exp] 856 / 0 AT1G69220 855 / 0.0 Protein kinase superfamily protein (.1.2) Potri.011G116300 [exp] 266 / 5e-78 AT3G15220 817 / 0.0 Protein kinase superfamily protein (.1) Potri.001G397600 [exp] 256 / 5e-74 AT3G15220 828 / 0.0 Protein kinase superfamily protein (.1) Potri.001G349300 [exp] 201 / 2e-54 AT5G14720 963 / 0.0 Protein kinase superfamily protein (.1) Potri.003G186700 [exp] 198 / 2e-53 AT1G79640 862 / 0.0 Protein kinase superfamily protein (.1.2) Potri.001G037900 [exp] 196 / 5e-53 AT1G79640 858 / 0.0 Protein kinase superfamily protein (.1.2) Potri.001G084700 [exp] 197 / 6e-53 AT4G10730 905 / 0.0 Protein kinase superfamily protein (.1) Potri.003G146000 [exp] 194 / 5e-52 AT4G10730 902 / 0.0 Protein kinase superfamily protein (.1) Potri.007G070100 [exp] 187 / 9e-49 AT3G13530 1960 / 0.0 MAP3K EPSILON PROTEIN KINASE, mitogen-activated protein kinase kinase kinase 7 (.1) Potri.005G094200 [exp] 183 / 3e-47 AT3G13530 1979 / 0.0 MAP3K EPSILON PROTEIN KINASE, mitogen-activated protein kinase kinase kinase 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10037070 pacid=23152600 polypeptide=Lus10037070 locus=Lus10037070.g ID=Lus10037070.BGIv1.0 annot-version=v1.0 ATGGATCACCCGCCTACTTCCCGCCGATCATGGAAACCGCCGGCGCCGACCACCGACATCTACTCCACATTCGTCGTCCACGACTCCTCGTCTGAATCCG AGCCGGATCCGAAACCCAGACCCGCCAGGAGCTCCTCCTCCCGTCTTCCTAACACCACCACCGACGACATCTACGCCACCACGGTGTACAAGGGCGGCGA TCTCGCGAAAAGCGACGGAGAGGAGGATGAAGACGACGAGGAATCGCTGCCTCCGCTCCTCAAGCGACTCCCGAAGGACTTCGGTGGCGGGATGGACGAC GAGCTGGCGGAGGACGCTGGCGACGACTACGACGGCGACTTCGGGACGATGATCGTAAAAACGAATCGAGGCGGAGGAGGAGGAGGTAGGCAGCGGAACC TTTCGTCGTCTTCCACGACAGCTAAGTCTCCGTGGAGCAGCTCGTCGTATGGGAATTTTAGTAAGAGGGACTACGGCGGCGATGAGGAGGATGAGGACGA AGATGACAGCGGCGATGGGGAAGGGTTTGGGACGTTTGTGGTGAAATCGACGTTGAGTGGGACGGTAGTGAGGAAGAGTGGCGAAGATGGCGGTAGTGGA TCGACTATGGGGAGAGCTGTGGCGAGCATGCAGGGAGCTGGGAATTTAGGGTTTGGGAATCAGAGGAGGAGGAGGAGCGGATCGTTGTCTTCACAGGGGG ACGACAATAGGCACCATCCATATACTAAAGTCTCTGCTAGCTCGATTCCAGATAGTGTTACCAGAGAGGATCCTACTACCAAGTATGAATTGCTCAATGA ACTAGGTAAGGGGTCGTATGGGGCTGTCTACAAAGCAAGGGATTTAAGGACTTCAGAGCTTGTGGCGATCAAAGTTATATCGTTATCAGAGGGAGAAGAA GGTTATGAAGAAATTCGAGGCGAGATTGAGATGTTGCAGCAATGTAGCCATCCGAATGTTGTGCGGTACCTAGGAAGTTATCAAGGTGAAGACTATCTCT GGATAGTTATGGAGTATTGTGGGGGTGGAAGTGTGGCTGACTTGATGAATGTTACCGAGGAAGCTTTGGAGGAGAATCAAATAGCATATATATGCAGGGA AGCTCTTAAGGGCCTTGCTTATTTGCATTCAATTTTCAAAGTACATAGGGATATCAAAGGTGGCAACATCTTACTAACCGAACAAGGAGAAGTCAAGTTG GGTGATTTTGGGGTTGCTGCACAACTTACCAGAACCATGTCAAAGCGGAACACGTTCATCGGCACTCCACATTGGATGGCGCCAGAAGTAATTCAGGAAA GCCGCTATGATGGGAAGGTGGATGTGTGGGCCCTTGGCGTTTCTGCAATTGAGATGGCTGAGGGTCTTCCTCCAAGATCATCGGTTCATCCTATGAGGGT TTTGTTCATGATATCAATTGAACCAGCGCCAATGCTTGAGGATAAAGAGAAGTGGTCGCTTATCTTTCACGATTTCGTTGCAAAGTGCCTCACAAAGGAA CCACGTTCACGTCCACCCGCATTTGAAATGTTGAAGCACAAATTCATTGACAGATGCAAAGTTGAAGCCTCTACAATGTTGCCTAAGATTGAAAAGGCTA GAAAAGTTAGGGCGGCAATTGCTATGCAACCACAAAATCTTGATCCGGGTGTCCCAGAGCCACCAGAACAGTCAAACTCGAATGAGGAATATGAGGCCAC AGTTCCATCAAGGAGACCTCAGGAAGCAAGTGAATTGCCTAGTTCATCAGTTGGTGGGCAATGCCCTGTTGGAGGTGATTTTGGCACTTTTATCGTCCAT GTCGGAGACGAGGGGAATAAGACCATGAAGCATGATGAATTCAGCCCTATCAATGAAACGTCTGATATCGCGGAGGGTGCTACTACAGTTATCGGAGTCC AACCATCTGAATCTTGGAAGGATAGCAGTACCAATGGTGATGCTGCCAAAAAGATTCTGTTGGGTGATGCATCCCAGACTGTGAAGGCATTTTCATCTCC TTTCGGAACATCCACCGTCGCTCCCAAGATGAAAAACTTGTCTCAAACTGTTAGAGGTGATGGAGGAAAGAGCGCCACAACTTCAAAAGGCGAAACTGCC AGTAAGCGAGTTTTCGCATTGCAGGATAAGCTATGGTCGATATATGCAGCTGGTAACACCGTACCTATTCCCTTCTTGAGGGCAACAGATATATCGCCTA TCGCTCTTTTGACAGACAATGTCCTAGGAGGTAATTGTGATGACAATGGTGGAGCTGCTGCAGCAGAAGCGTTGCAGGAGCTTTTCACTGGTGACGGCTT TTCCAGAAAAGGCCGGGGGGTACAAAATGAGATGCCCTTACCACCAAGTGTATACCAGAGACTAGGTTCAAGCTCAACTCTTATGAATCTGGCACAAGCT TTAGCGTACCACAAAATGTGCTATGAGGAGATGCCACTTCAAGATTTGCAGGTGACACAAGAACAGCAAACCATTCAGAACCTTACAGACACGCTGCGGA CCATCCTCCGATTGTAG
AA sequence Show only first row Show all	>Lus10037070 pacid=23152600 polypeptide=Lus10037070 locus=Lus10037070.g ID=Lus10037070.BGIv1.0 annot-version=v1.0 MDHPPTSRRSWKPPAPTTDIYSTFVVHDSSSESEPDPKPRPARSSSSRLPNTTTDDIYATTVYKGGDLAKSDGEEDEDDEESLPPLLKRLPKDFGGGMDD ELAEDAGDDYDGDFGTMIVKTNRGGGGGGRQRNLSSSSTTAKSPWSSSSYGNFSKRDYGGDEEDEDEDDSGDGEGFGTFVVKSTLSGTVVRKSGEDGGSG STMGRAVASMQGAGNLGFGNQRRRRSGSLSSQGDDNRHHPYTKVSASSIPDSVTREDPTTKYELLNELGKGSYGAVYKARDLRTSELVAIKVISLSEGEE GYEEIRGEIEMLQQCSHPNVVRYLGSYQGEDYLWIVMEYCGGGSVADLMNVTEEALEENQIAYICREALKGLAYLHSIFKVHRDIKGGNILLTEQGEVKL GDFGVAAQLTRTMSKRNTFIGTPHWMAPEVIQESRYDGKVDVWALGVSAIEMAEGLPPRSSVHPMRVLFMISIEPAPMLEDKEKWSLIFHDFVAKCLTKE PRSRPPAFEMLKHKFIDRCKVEASTMLPKIEKARKVRAAIAMQPQNLDPGVPEPPEQSNSNEEYEATVPSRRPQEASELPSSSVGGQCPVGGDFGTFIVH VGDEGNKTMKHDEFSPINETSDIAEGATTVIGVQPSESWKDSSTNGDAAKKILLGDASQTVKAFSSPFGTSTVAPKMKNLSQTVRGDGGKSATTSKGETA SKRVFALQDKLWSIYAAGNTVPIPFLRATDISPIALLTDNVLGGNCDDNGGAAAAEALQELFTGDGFSRKGRGVQNEMPLPPSVYQRLGSSSTLMNLAQA LAYHKMCYEEMPLQDLQVTQEQQTIQNLTDTLRTILRL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69220		SIK1	Protein kinase superfamily pro...		Lus10037070 [exp]	0	1
AT5G55500		ATXYLT	"beta-1,2-xylosyltransferase",...		Lus10016585 [exp]	1.0	0.8557
AT5G15400			U-box domain-containing protei...		Lus10005222 [exp]	6.3	0.8265
AT1G80950			Phospholipid/glycerol acyltran...		Lus10003950 [exp]	10.5	0.7793
AT5G07920		ATDGK1, DGK1	DIACYLGLYCEROL KINASE 1, diacy...		Lus10021625 [exp]	12.8	0.7708
AT1G59900		AT-E1 ALPHA, AT...	pyruvate dehydrogenase complex...		Lus10013295 [exp]	17.2	0.8399
AT5G57140		ATPAP28, PAP28	purple acid phosphatase 28 (.1...		Lus10027596 [exp]	18.7	0.7745
AT3G02090		MPPBETA	Insulinase (Peptidase family M...		Lus10040885 [exp]	28.5	0.8313
AT5G44240		ALA2	aminophospholipid ATPase 2 (.1...		Lus10018620 [exp]	28.6	0.7575
AT4G33410		ATSPPL1	SIGNAL PEPTIDE PEPTIDASE-LIKE ...		Lus10039239 [exp]	28.7	0.8296
AT1G18260		HRD3A, EBS5	EMS-mutagenized bri1 suppresso...		Lus10009680 [exp]	32.6	0.7548

Compare expression of checked genes

Lus10037070 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.